Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10700

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10690 and SGL_RS10695 are separated by 39 nucleotidesSGL_RS10695 and SGL_RS10700 are separated by 95 nucleotidesSGL_RS10700 and SGL_RS10705 are separated by 8 nucleotidesSGL_RS10705 and SGL_RS10710 are separated by 19 nucleotides SGL_RS10690: SGL_RS10690 - PilN domain-containing protein, at 1,866,843 to 1,867,697 _RS10690 SGL_RS10695: SGL_RS10695 - pilus assembly protein, at 1,867,737 to 1,868,564 _RS10695 SGL_RS10700: SGL_RS10700 - type IV pilus secretin PilQ, at 1,868,660 to 1,871,002 _RS10700 SGL_RS10705: SGL_RS10705 - FkbM family methyltransferase, at 1,871,011 to 1,871,835 _RS10705 SGL_RS10710: SGL_RS10710 - FkbM family methyltransferase, at 1,871,855 to 1,872,589 _RS10710 Position (kb) 1868 1869 1870 1871 1872Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1867.660 kb on - strandat 1867.701 kb on + strandat 1867.749 kb on + strandat 1867.838 kb on - strand, within SGL_RS10695at 1867.886 kb on + strand, within SGL_RS10695at 1867.936 kb on + strand, within SGL_RS10695at 1867.982 kb on - strand, within SGL_RS10695at 1867.984 kb on + strand, within SGL_RS10695at 1868.027 kb on + strand, within SGL_RS10695at 1868.339 kb on - strand, within SGL_RS10695at 1868.377 kb on + strand, within SGL_RS10695at 1868.390 kb on - strand, within SGL_RS10695at 1868.390 kb on - strand, within SGL_RS10695at 1868.452 kb on + strand, within SGL_RS10695at 1868.469 kb on + strand, within SGL_RS10695at 1868.523 kb on + strandat 1868.960 kb on + strand, within SGL_RS10700at 1869.053 kb on + strand, within SGL_RS10700at 1869.060 kb on + strand, within SGL_RS10700at 1869.078 kb on - strand, within SGL_RS10700at 1869.258 kb on + strand, within SGL_RS10700at 1869.346 kb on - strand, within SGL_RS10700at 1869.447 kb on - strand, within SGL_RS10700at 1869.619 kb on + strand, within SGL_RS10700at 1869.619 kb on + strand, within SGL_RS10700at 1869.814 kb on + strand, within SGL_RS10700at 1870.597 kb on + strand, within SGL_RS10700at 1871.027 kb on + strandat 1871.299 kb on + strand, within SGL_RS10705at 1871.358 kb on - strand, within SGL_RS10705at 1871.939 kb on - strand, within SGL_RS10710at 1871.941 kb on + strand, within SGL_RS10710at 1871.986 kb on + strand, within SGL_RS10710at 1871.996 kb on - strand, within SGL_RS10710

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,867,660 - +3.0
1,867,701 + +1.2
1,867,749 + +2.8
1,867,838 - SGL_RS10695 0.12 +2.7
1,867,886 + SGL_RS10695 0.18 +3.3
1,867,936 + SGL_RS10695 0.24 +3.0
1,867,982 - SGL_RS10695 0.30 +3.3
1,867,984 + SGL_RS10695 0.30 +3.2
1,868,027 + SGL_RS10695 0.35 +3.5
1,868,339 - SGL_RS10695 0.73 +3.7
1,868,377 + SGL_RS10695 0.77 +3.5
1,868,390 - SGL_RS10695 0.79 +2.6
1,868,390 - SGL_RS10695 0.79 +2.6
1,868,452 + SGL_RS10695 0.86 +0.8
1,868,469 + SGL_RS10695 0.88 +0.2
1,868,523 + -1.4
1,868,960 + SGL_RS10700 0.13 +2.2
1,869,053 + SGL_RS10700 0.17 +1.5
1,869,060 + SGL_RS10700 0.17 +1.7
1,869,078 - SGL_RS10700 0.18 +1.0
1,869,258 + SGL_RS10700 0.26 +0.8
1,869,346 - SGL_RS10700 0.29 +2.1
1,869,447 - SGL_RS10700 0.34 +1.0
1,869,619 + SGL_RS10700 0.41 +2.1
1,869,619 + SGL_RS10700 0.41 +0.7
1,869,814 + SGL_RS10700 0.49 +1.0
1,870,597 + SGL_RS10700 0.83 +1.0
1,871,027 + -0.4
1,871,299 + SGL_RS10705 0.35 +0.5
1,871,358 - SGL_RS10705 0.42 +0.2
1,871,939 - SGL_RS10710 0.11 -1.9
1,871,941 + SGL_RS10710 0.12 -0.7
1,871,986 + SGL_RS10710 0.18 -0.5
1,871,996 - SGL_RS10710 0.19 -0.9

Or see this region's nucleotide sequence