Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10360

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10355 and SGL_RS10360 are separated by 145 nucleotidesSGL_RS10360 and SGL_RS10365 are separated by 69 nucleotidesSGL_RS10365 and SGL_RS10370 overlap by 97 nucleotides SGL_RS10355: SGL_RS10355 - ABC transporter ATP-binding protein, at 1,797,552 to 1,798,658 _RS10355 SGL_RS10360: SGL_RS10360 - hypothetical protein, at 1,798,804 to 1,799,538 _RS10360 SGL_RS10365: SGL_RS10365 - CbiQ family ECF transporter T component, at 1,799,608 to 1,800,483 _RS10365 SGL_RS10370: SGL_RS10370 - anthranilate synthase component I, at 1,800,387 to 1,801,844 _RS10370 Position (kb) 1798 1799 1800Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1798.834 kb on + strandat 1798.861 kb on - strandat 1798.901 kb on - strand, within SGL_RS10360at 1798.969 kb on + strand, within SGL_RS10360at 1799.061 kb on + strand, within SGL_RS10360at 1799.074 kb on - strand, within SGL_RS10360at 1799.351 kb on - strand, within SGL_RS10360at 1799.423 kb on - strand, within SGL_RS10360at 1799.476 kb on + strandat 1799.481 kb on + strandat 1799.491 kb on - strandat 1799.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,798,834 + -2.3
1,798,861 - -0.2
1,798,901 - SGL_RS10360 0.13 -2.0
1,798,969 + SGL_RS10360 0.22 -1.8
1,799,061 + SGL_RS10360 0.35 -1.5
1,799,074 - SGL_RS10360 0.37 -2.5
1,799,351 - SGL_RS10360 0.74 -2.2
1,799,423 - SGL_RS10360 0.84 -3.8
1,799,476 + -4.2
1,799,481 + -1.5
1,799,491 - -0.8
1,799,613 - -3.8

Or see this region's nucleotide sequence