Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09985 and SGL_RS09990 are separated by 63 nucleotides SGL_RS09990 and SGL_RS10000 are separated by 224 nucleotides SGL_RS10000 and SGL_RS19460 overlap by 2 nucleotides
SGL_RS09985: SGL_RS09985 - cation diffusion facilitator family transporter, at 1,719,644 to 1,720,576
_RS09985
SGL_RS09990: SGL_RS09990 - NAD(P)H-quinone oxidoreductase subunit N, at 1,720,640 to 1,721,125
_RS09990
SGL_RS10000: SGL_RS10000 - translation elongation factor Ts, at 1,721,350 to 1,722,006
_RS10000
SGL_RS19460: SGL_RS19460 - hypothetical protein, at 1,722,005 to 1,722,163
_RS19460
Position (kb) 1720
1721
1722 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1719.713 kb on - strand at 1719.717 kb on + strand at 1719.724 kb on + strand at 1719.750 kb on - strand, within SGL_RS09985 at 1719.793 kb on + strand, within SGL_RS09985 at 1719.794 kb on + strand, within SGL_RS09985 at 1719.801 kb on - strand, within SGL_RS09985 at 1719.801 kb on - strand, within SGL_RS09985 at 1719.803 kb on + strand, within SGL_RS09985 at 1719.858 kb on + strand, within SGL_RS09985 at 1719.946 kb on - strand, within SGL_RS09985 at 1719.974 kb on + strand, within SGL_RS09985 at 1720.008 kb on - strand, within SGL_RS09985 at 1720.015 kb on + strand, within SGL_RS09985 at 1720.053 kb on - strand, within SGL_RS09985 at 1720.157 kb on + strand, within SGL_RS09985 at 1720.197 kb on + strand, within SGL_RS09985 at 1720.197 kb on + strand, within SGL_RS09985 at 1720.202 kb on + strand, within SGL_RS09985 at 1720.202 kb on + strand, within SGL_RS09985 at 1720.210 kb on - strand, within SGL_RS09985 at 1720.276 kb on + strand, within SGL_RS09985 at 1720.279 kb on + strand, within SGL_RS09985 at 1720.371 kb on - strand, within SGL_RS09985 at 1720.403 kb on + strand, within SGL_RS09985 at 1720.403 kb on + strand, within SGL_RS09985 at 1720.406 kb on - strand, within SGL_RS09985 at 1720.520 kb on + strand at 1720.556 kb on - strand at 1720.692 kb on - strand, within SGL_RS09990 at 1721.036 kb on + strand, within SGL_RS09990 at 1721.166 kb on - strand at 1722.061 kb on + strand, within SGL_RS19460 at 1722.069 kb on + strand, within SGL_RS19460 at 1722.121 kb on - strand, within SGL_RS19460
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 1,719,713 - -0.2 1,719,717 + +0.0 1,719,724 + +0.1 1,719,750 - SGL_RS09985 0.11 +0.5 1,719,793 + SGL_RS09985 0.16 -0.7 1,719,794 + SGL_RS09985 0.16 -0.4 1,719,801 - SGL_RS09985 0.17 -0.6 1,719,801 - SGL_RS09985 0.17 +0.6 1,719,803 + SGL_RS09985 0.17 -0.3 1,719,858 + SGL_RS09985 0.23 +0.2 1,719,946 - SGL_RS09985 0.32 +3.1 1,719,974 + SGL_RS09985 0.35 +0.3 1,720,008 - SGL_RS09985 0.39 +0.3 1,720,015 + SGL_RS09985 0.40 +0.7 1,720,053 - SGL_RS09985 0.44 +0.5 1,720,157 + SGL_RS09985 0.55 -0.4 1,720,197 + SGL_RS09985 0.59 +0.2 1,720,197 + SGL_RS09985 0.59 +0.1 1,720,202 + SGL_RS09985 0.60 -0.2 1,720,202 + SGL_RS09985 0.60 -0.0 1,720,210 - SGL_RS09985 0.61 -0.3 1,720,276 + SGL_RS09985 0.68 +0.1 1,720,279 + SGL_RS09985 0.68 -2.1 1,720,371 - SGL_RS09985 0.78 -0.4 1,720,403 + SGL_RS09985 0.81 +0.7 1,720,403 + SGL_RS09985 0.81 +0.5 1,720,406 - SGL_RS09985 0.82 -0.2 1,720,520 + -0.3 1,720,556 - +0.8 1,720,692 - SGL_RS09990 0.11 +1.9 1,721,036 + SGL_RS09990 0.81 -1.2 1,721,166 - +5.4 1,722,061 + SGL_RS19460 0.35 -4.2 1,722,069 + SGL_RS19460 0.40 -0.7 1,722,121 - SGL_RS19460 0.73 -2.7
Or see this region's nucleotide sequence