Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09915 and SGL_RS09920 are separated by 68 nucleotides SGL_RS09920 and SGL_RS09925 are separated by 93 nucleotides
SGL_RS09915: SGL_RS09915 - isochorismate synthase, at 1,704,375 to 1,705,799
_RS09915
SGL_RS09920: SGL_RS09920 - hypothetical protein, at 1,705,868 to 1,707,223
_RS09920
SGL_RS09925: SGL_RS09925 - apolipoprotein N-acyltransferase, at 1,707,317 to 1,708,876
_RS09925
Position (kb)
1705
1706
1707
1708 Strain fitness (log2 ratio)
-1
0
1
2 at 1704.966 kb on + strand, within SGL_RS09915 at 1704.968 kb on + strand, within SGL_RS09915 at 1705.617 kb on + strand, within SGL_RS09915 at 1705.625 kb on - strand, within SGL_RS09915 at 1705.874 kb on - strand at 1705.958 kb on + strand at 1706.020 kb on + strand, within SGL_RS09920 at 1706.044 kb on + strand, within SGL_RS09920 at 1706.081 kb on - strand, within SGL_RS09920 at 1706.098 kb on + strand, within SGL_RS09920 at 1706.106 kb on - strand, within SGL_RS09920 at 1706.152 kb on - strand, within SGL_RS09920 at 1706.210 kb on - strand, within SGL_RS09920 at 1706.210 kb on - strand, within SGL_RS09920 at 1706.210 kb on - strand, within SGL_RS09920 at 1706.210 kb on - strand, within SGL_RS09920 at 1706.256 kb on + strand, within SGL_RS09920 at 1706.296 kb on - strand, within SGL_RS09920 at 1706.347 kb on + strand, within SGL_RS09920 at 1706.499 kb on - strand, within SGL_RS09920 at 1706.503 kb on + strand, within SGL_RS09920 at 1706.560 kb on - strand, within SGL_RS09920 at 1706.603 kb on - strand, within SGL_RS09920 at 1706.736 kb on + strand, within SGL_RS09920 at 1706.747 kb on + strand, within SGL_RS09920 at 1706.830 kb on - strand, within SGL_RS09920 at 1706.843 kb on - strand, within SGL_RS09920 at 1706.918 kb on - strand, within SGL_RS09920 at 1706.940 kb on - strand, within SGL_RS09920 at 1707.061 kb on + strand, within SGL_RS09920 at 1707.173 kb on - strand at 1707.335 kb on + strand at 1707.343 kb on - strand at 1707.425 kb on - strand at 1707.461 kb on + strand at 1707.474 kb on - strand, within SGL_RS09925 at 1707.494 kb on + strand, within SGL_RS09925 at 1707.521 kb on + strand, within SGL_RS09925 at 1707.763 kb on - strand, within SGL_RS09925 at 1707.767 kb on + strand, within SGL_RS09925 at 1707.775 kb on - strand, within SGL_RS09925 at 1707.786 kb on + strand, within SGL_RS09925
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 1,704,966 + SGL_RS09915 0.41 -1.5 1,704,968 + SGL_RS09915 0.42 -0.7 1,705,617 + SGL_RS09915 0.87 -1.5 1,705,625 - SGL_RS09915 0.88 -0.2 1,705,874 - +1.3 1,705,958 + +1.2 1,706,020 + SGL_RS09920 0.11 +0.9 1,706,044 + SGL_RS09920 0.13 +1.2 1,706,081 - SGL_RS09920 0.16 +2.3 1,706,098 + SGL_RS09920 0.17 +0.6 1,706,106 - SGL_RS09920 0.18 +2.3 1,706,152 - SGL_RS09920 0.21 +1.6 1,706,210 - SGL_RS09920 0.25 +1.6 1,706,210 - SGL_RS09920 0.25 +1.9 1,706,210 - SGL_RS09920 0.25 +2.0 1,706,210 - SGL_RS09920 0.25 +1.9 1,706,256 + SGL_RS09920 0.29 +0.3 1,706,296 - SGL_RS09920 0.32 +1.9 1,706,347 + SGL_RS09920 0.35 +2.2 1,706,499 - SGL_RS09920 0.47 +1.2 1,706,503 + SGL_RS09920 0.47 +1.3 1,706,560 - SGL_RS09920 0.51 +0.1 1,706,603 - SGL_RS09920 0.54 +1.3 1,706,736 + SGL_RS09920 0.64 +0.3 1,706,747 + SGL_RS09920 0.65 +0.6 1,706,830 - SGL_RS09920 0.71 +1.3 1,706,843 - SGL_RS09920 0.72 +0.7 1,706,918 - SGL_RS09920 0.77 +1.3 1,706,940 - SGL_RS09920 0.79 +2.0 1,707,061 + SGL_RS09920 0.88 -0.1 1,707,173 - +0.8 1,707,335 + +2.0 1,707,343 - +1.6 1,707,425 - +1.5 1,707,461 + +1.5 1,707,474 - SGL_RS09925 0.10 +2.4 1,707,494 + SGL_RS09925 0.11 +1.8 1,707,521 + SGL_RS09925 0.13 +1.3 1,707,763 - SGL_RS09925 0.29 +1.9 1,707,767 + SGL_RS09925 0.29 +2.3 1,707,775 - SGL_RS09925 0.29 +2.1 1,707,786 + SGL_RS09925 0.30 +1.5
Or see this region's nucleotide sequence