Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09920

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS09915 and SGL_RS09920 are separated by 68 nucleotidesSGL_RS09920 and SGL_RS09925 are separated by 93 nucleotides SGL_RS09915: SGL_RS09915 - isochorismate synthase, at 1,704,375 to 1,705,799 _RS09915 SGL_RS09920: SGL_RS09920 - hypothetical protein, at 1,705,868 to 1,707,223 _RS09920 SGL_RS09925: SGL_RS09925 - apolipoprotein N-acyltransferase, at 1,707,317 to 1,708,876 _RS09925 Position (kb) 1705 1706 1707 1708Strain fitness (log2 ratio) -1 0 1 2at 1704.966 kb on + strand, within SGL_RS09915at 1704.968 kb on + strand, within SGL_RS09915at 1705.617 kb on + strand, within SGL_RS09915at 1705.625 kb on - strand, within SGL_RS09915at 1705.874 kb on - strandat 1705.958 kb on + strandat 1706.020 kb on + strand, within SGL_RS09920at 1706.044 kb on + strand, within SGL_RS09920at 1706.081 kb on - strand, within SGL_RS09920at 1706.098 kb on + strand, within SGL_RS09920at 1706.106 kb on - strand, within SGL_RS09920at 1706.152 kb on - strand, within SGL_RS09920at 1706.210 kb on - strand, within SGL_RS09920at 1706.210 kb on - strand, within SGL_RS09920at 1706.210 kb on - strand, within SGL_RS09920at 1706.210 kb on - strand, within SGL_RS09920at 1706.256 kb on + strand, within SGL_RS09920at 1706.296 kb on - strand, within SGL_RS09920at 1706.347 kb on + strand, within SGL_RS09920at 1706.499 kb on - strand, within SGL_RS09920at 1706.503 kb on + strand, within SGL_RS09920at 1706.560 kb on - strand, within SGL_RS09920at 1706.603 kb on - strand, within SGL_RS09920at 1706.736 kb on + strand, within SGL_RS09920at 1706.747 kb on + strand, within SGL_RS09920at 1706.830 kb on - strand, within SGL_RS09920at 1706.843 kb on - strand, within SGL_RS09920at 1706.918 kb on - strand, within SGL_RS09920at 1706.940 kb on - strand, within SGL_RS09920at 1707.061 kb on + strand, within SGL_RS09920at 1707.173 kb on - strandat 1707.335 kb on + strandat 1707.343 kb on - strandat 1707.425 kb on - strandat 1707.461 kb on + strandat 1707.474 kb on - strand, within SGL_RS09925at 1707.494 kb on + strand, within SGL_RS09925at 1707.521 kb on + strand, within SGL_RS09925at 1707.763 kb on - strand, within SGL_RS09925at 1707.767 kb on + strand, within SGL_RS09925at 1707.775 kb on - strand, within SGL_RS09925at 1707.786 kb on + strand, within SGL_RS09925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
remove
1,704,966 + SGL_RS09915 0.41 -1.5
1,704,968 + SGL_RS09915 0.42 -0.7
1,705,617 + SGL_RS09915 0.87 -1.5
1,705,625 - SGL_RS09915 0.88 -0.2
1,705,874 - +1.3
1,705,958 + +1.2
1,706,020 + SGL_RS09920 0.11 +0.9
1,706,044 + SGL_RS09920 0.13 +1.2
1,706,081 - SGL_RS09920 0.16 +2.3
1,706,098 + SGL_RS09920 0.17 +0.6
1,706,106 - SGL_RS09920 0.18 +2.3
1,706,152 - SGL_RS09920 0.21 +1.6
1,706,210 - SGL_RS09920 0.25 +1.6
1,706,210 - SGL_RS09920 0.25 +1.9
1,706,210 - SGL_RS09920 0.25 +2.0
1,706,210 - SGL_RS09920 0.25 +1.9
1,706,256 + SGL_RS09920 0.29 +0.3
1,706,296 - SGL_RS09920 0.32 +1.9
1,706,347 + SGL_RS09920 0.35 +2.2
1,706,499 - SGL_RS09920 0.47 +1.2
1,706,503 + SGL_RS09920 0.47 +1.3
1,706,560 - SGL_RS09920 0.51 +0.1
1,706,603 - SGL_RS09920 0.54 +1.3
1,706,736 + SGL_RS09920 0.64 +0.3
1,706,747 + SGL_RS09920 0.65 +0.6
1,706,830 - SGL_RS09920 0.71 +1.3
1,706,843 - SGL_RS09920 0.72 +0.7
1,706,918 - SGL_RS09920 0.77 +1.3
1,706,940 - SGL_RS09920 0.79 +2.0
1,707,061 + SGL_RS09920 0.88 -0.1
1,707,173 - +0.8
1,707,335 + +2.0
1,707,343 - +1.6
1,707,425 - +1.5
1,707,461 + +1.5
1,707,474 - SGL_RS09925 0.10 +2.4
1,707,494 + SGL_RS09925 0.11 +1.8
1,707,521 + SGL_RS09925 0.13 +1.3
1,707,763 - SGL_RS09925 0.29 +1.9
1,707,767 + SGL_RS09925 0.29 +2.3
1,707,775 - SGL_RS09925 0.29 +2.1
1,707,786 + SGL_RS09925 0.30 +1.5

Or see this region's nucleotide sequence