Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09655

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09645 and SGL_RS09650 are separated by 278 nucleotidesSGL_RS09650 and SGL_RS09655 are separated by 148 nucleotidesSGL_RS09655 and SGL_RS09660 are separated by 370 nucleotides SGL_RS09645: SGL_RS09645 - ATP-binding protein, at 1,653,474 to 1,654,664 _RS09645 SGL_RS09650: SGL_RS09650 - hypothetical protein, at 1,654,943 to 1,655,140 _RS09650 SGL_RS09655: SGL_RS09655 - heterocyst frequency control protein PatD, at 1,655,289 to 1,655,672 _RS09655 SGL_RS09660: SGL_RS09660 - RelA/SpoT family protein, at 1,656,043 to 1,658,325 _RS09660 Position (kb) 1655 1656Strain fitness (log2 ratio) -2 -1 0 1at 1654.436 kb on - strand, within SGL_RS09645at 1654.503 kb on - strand, within SGL_RS09645at 1654.504 kb on + strand, within SGL_RS09645at 1654.537 kb on - strand, within SGL_RS09645at 1654.552 kb on + strandat 1654.554 kb on - strandat 1654.598 kb on - strandat 1654.657 kb on + strandat 1654.672 kb on - strandat 1654.698 kb on - strandat 1654.701 kb on + strandat 1654.707 kb on + strandat 1654.707 kb on + strandat 1654.727 kb on + strandat 1654.958 kb on + strandat 1654.966 kb on - strand, within SGL_RS09650at 1654.981 kb on + strand, within SGL_RS09650at 1655.063 kb on + strand, within SGL_RS09650at 1655.105 kb on + strand, within SGL_RS09650at 1655.165 kb on + strandat 1655.195 kb on - strandat 1655.205 kb on - strandat 1655.286 kb on + strandat 1655.294 kb on - strandat 1655.310 kb on + strandat 1655.320 kb on + strandat 1655.376 kb on - strand, within SGL_RS09655at 1655.412 kb on + strand, within SGL_RS09655at 1655.432 kb on + strand, within SGL_RS09655at 1655.506 kb on - strand, within SGL_RS09655at 1655.629 kb on + strand, within SGL_RS09655at 1655.701 kb on - strandat 1655.751 kb on + strandat 1655.764 kb on - strandat 1655.802 kb on + strandat 1655.929 kb on + strandat 1656.021 kb on + strandat 1656.097 kb on - strandat 1656.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,654,436 - SGL_RS09645 0.81 -0.0
1,654,503 - SGL_RS09645 0.86 +0.1
1,654,504 + SGL_RS09645 0.86 +0.7
1,654,537 - SGL_RS09645 0.89 -0.5
1,654,552 + -0.4
1,654,554 - +0.0
1,654,598 - +0.5
1,654,657 + +0.4
1,654,672 - -0.3
1,654,698 - +0.7
1,654,701 + -0.5
1,654,707 + -0.2
1,654,707 + -0.6
1,654,727 + -0.8
1,654,958 + -1.2
1,654,966 - SGL_RS09650 0.12 +0.4
1,654,981 + SGL_RS09650 0.19 -0.7
1,655,063 + SGL_RS09650 0.61 -1.4
1,655,105 + SGL_RS09650 0.82 -0.8
1,655,165 + -0.3
1,655,195 - +0.1
1,655,205 - -1.1
1,655,286 + +0.7
1,655,294 - +0.3
1,655,310 + +0.6
1,655,320 + -0.3
1,655,376 - SGL_RS09655 0.23 +1.5
1,655,412 + SGL_RS09655 0.32 -0.0
1,655,432 + SGL_RS09655 0.37 +1.6
1,655,506 - SGL_RS09655 0.57 +1.7
1,655,629 + SGL_RS09655 0.89 -0.4
1,655,701 - -0.5
1,655,751 + -0.7
1,655,764 - -1.0
1,655,802 + -0.7
1,655,929 + -1.9
1,656,021 + -2.5
1,656,097 - -0.7
1,656,099 - -1.3

Or see this region's nucleotide sequence