Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09380

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09375 and SGL_RS09380 are separated by 218 nucleotidesSGL_RS09380 and SGL_RS09385 are separated by 20 nucleotidesSGL_RS09385 and SGL_RS09390 are separated by 25 nucleotides SGL_RS09375: SGL_RS09375 - 3-isopropylmalate dehydrogenase, at 1,608,232 to 1,609,320 _RS09375 SGL_RS09380: SGL_RS09380 - hypothetical protein, at 1,609,539 to 1,609,805 _RS09380 SGL_RS09385: SGL_RS09385 - 2-carboxy-1,4-naphthoquinone phytyltransferase, at 1,609,826 to 1,610,749 _RS09385 SGL_RS09390: SGL_RS09390 - pentapeptide repeat-containing protein, at 1,610,775 to 1,611,464 _RS09390 Position (kb) 1609 1610Strain fitness (log2 ratio) -1 0 1 2at 1609.415 kb on + strandat 1609.456 kb on - strandat 1609.508 kb on + strandat 1609.574 kb on + strand, within SGL_RS09380at 1609.583 kb on - strand, within SGL_RS09380at 1609.654 kb on - strand, within SGL_RS09380at 1609.666 kb on + strand, within SGL_RS09380at 1609.750 kb on - strand, within SGL_RS09380at 1609.775 kb on - strand, within SGL_RS09380at 1610.241 kb on - strand, within SGL_RS09385at 1610.271 kb on + strand, within SGL_RS09385at 1610.434 kb on + strand, within SGL_RS09385at 1610.441 kb on - strand, within SGL_RS09385at 1610.602 kb on + strand, within SGL_RS09385at 1610.610 kb on - strand, within SGL_RS09385at 1610.738 kb on + strandat 1610.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,609,415 + +0.6
1,609,456 - +0.8
1,609,508 + +0.9
1,609,574 + SGL_RS09380 0.13 +1.1
1,609,583 - SGL_RS09380 0.16 +1.7
1,609,654 - SGL_RS09380 0.43 +1.6
1,609,666 + SGL_RS09380 0.48 +2.0
1,609,750 - SGL_RS09380 0.79 +0.2
1,609,775 - SGL_RS09380 0.88 +1.7
1,610,241 - SGL_RS09385 0.45 -1.1
1,610,271 + SGL_RS09385 0.48 -0.7
1,610,434 + SGL_RS09385 0.66 -0.4
1,610,441 - SGL_RS09385 0.67 -1.7
1,610,602 + SGL_RS09385 0.84 -0.7
1,610,610 - SGL_RS09385 0.85 -1.1
1,610,738 + -0.1
1,610,804 - -1.2

Or see this region's nucleotide sequence