Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09335

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18840 and SGL_RS09335 are separated by 372 nucleotidesSGL_RS09335 and SGL_RS09340 are separated by 85 nucleotidesSGL_RS09340 and SGL_RS09345 are separated by 280 nucleotides SGL_RS18840: SGL_RS18840 - hypothetical protein, at 1,600,044 to 1,600,286 _RS18840 SGL_RS09335: SGL_RS09335 - sodium-dependent bicarbonate transport family permease, at 1,600,659 to 1,601,783 _RS09335 SGL_RS09340: SGL_RS09340 - hypothetical protein, at 1,601,869 to 1,602,201 _RS09340 SGL_RS09345: SGL_RS09345 - NAD(+) kinase, at 1,602,482 to 1,603,405 _RS09345 Position (kb) 1600 1601 1602Strain fitness (log2 ratio) -1 0 1 2at 1599.693 kb on + strandat 1600.197 kb on - strand, within SGL_RS18840at 1600.706 kb on + strandat 1600.721 kb on - strandat 1600.791 kb on + strand, within SGL_RS09335at 1600.806 kb on - strand, within SGL_RS09335at 1600.829 kb on - strand, within SGL_RS09335at 1600.924 kb on + strand, within SGL_RS09335at 1600.934 kb on + strand, within SGL_RS09335at 1600.941 kb on - strand, within SGL_RS09335at 1600.941 kb on - strand, within SGL_RS09335at 1600.957 kb on - strand, within SGL_RS09335at 1601.022 kb on - strand, within SGL_RS09335at 1601.023 kb on + strand, within SGL_RS09335at 1601.028 kb on + strand, within SGL_RS09335at 1601.032 kb on - strand, within SGL_RS09335at 1601.081 kb on - strand, within SGL_RS09335at 1601.215 kb on - strand, within SGL_RS09335at 1601.328 kb on - strand, within SGL_RS09335at 1601.485 kb on - strand, within SGL_RS09335at 1601.517 kb on - strand, within SGL_RS09335at 1601.541 kb on - strand, within SGL_RS09335at 1601.577 kb on - strand, within SGL_RS09335at 1601.579 kb on - strand, within SGL_RS09335at 1601.652 kb on - strand, within SGL_RS09335at 1601.685 kb on + strandat 1601.760 kb on + strandat 1601.786 kb on - strandat 1601.792 kb on + strandat 1601.804 kb on + strandat 1601.871 kb on + strandat 1601.973 kb on + strand, within SGL_RS09340at 1602.001 kb on - strand, within SGL_RS09340at 1602.008 kb on + strand, within SGL_RS09340at 1602.138 kb on + strand, within SGL_RS09340at 1602.298 kb on - strandat 1602.684 kb on + strand, within SGL_RS09345at 1602.697 kb on + strand, within SGL_RS09345at 1602.734 kb on + strand, within SGL_RS09345

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,599,693 + -0.3
1,600,197 - SGL_RS18840 0.63 -0.2
1,600,706 + +2.1
1,600,721 - +1.6
1,600,791 + SGL_RS09335 0.12 +1.1
1,600,806 - SGL_RS09335 0.13 +1.9
1,600,829 - SGL_RS09335 0.15 +1.6
1,600,924 + SGL_RS09335 0.24 +0.9
1,600,934 + SGL_RS09335 0.24 +1.6
1,600,941 - SGL_RS09335 0.25 +1.6
1,600,941 - SGL_RS09335 0.25 +1.4
1,600,957 - SGL_RS09335 0.26 +1.4
1,601,022 - SGL_RS09335 0.32 +2.0
1,601,023 + SGL_RS09335 0.32 +0.9
1,601,028 + SGL_RS09335 0.33 +1.2
1,601,032 - SGL_RS09335 0.33 +2.0
1,601,081 - SGL_RS09335 0.38 +1.6
1,601,215 - SGL_RS09335 0.49 +1.5
1,601,328 - SGL_RS09335 0.59 +1.4
1,601,485 - SGL_RS09335 0.73 +1.6
1,601,517 - SGL_RS09335 0.76 +2.1
1,601,541 - SGL_RS09335 0.78 +1.7
1,601,577 - SGL_RS09335 0.82 +1.9
1,601,579 - SGL_RS09335 0.82 +1.5
1,601,652 - SGL_RS09335 0.88 +0.7
1,601,685 + +1.5
1,601,760 + +1.7
1,601,786 - -0.7
1,601,792 + -0.0
1,601,804 + -0.3
1,601,871 + -0.6
1,601,973 + SGL_RS09340 0.31 -0.8
1,602,001 - SGL_RS09340 0.40 -0.5
1,602,008 + SGL_RS09340 0.42 -1.5
1,602,138 + SGL_RS09340 0.81 -0.5
1,602,298 - +0.2
1,602,684 + SGL_RS09345 0.22 +0.1
1,602,697 + SGL_RS09345 0.23 -1.2
1,602,734 + SGL_RS09345 0.27 +0.1

Or see this region's nucleotide sequence