Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08975

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08970 and SGL_RS08975 are separated by 55 nucleotidesSGL_RS08975 and SGL_RS08980 are separated by 109 nucleotides SGL_RS08970: SGL_RS08970 - ribosome biogenesis GTPase YlqF, at 1,519,114 to 1,519,953 _RS08970 SGL_RS08975: SGL_RS08975 - redox-regulated ATPase YchF, at 1,520,009 to 1,521,100 _RS08975 SGL_RS08980: SGL_RS08980 - UDP-glucose 4-epimerase GalE, at 1,521,210 to 1,522,226 _RS08980 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -1 0 1 2at 1519.049 kb on + strandat 1519.064 kb on - strandat 1519.087 kb on - strandat 1519.118 kb on - strandat 1519.118 kb on - strandat 1519.370 kb on - strand, within SGL_RS08970at 1519.549 kb on + strand, within SGL_RS08970at 1519.551 kb on + strand, within SGL_RS08970at 1519.907 kb on + strandat 1519.997 kb on + strandat 1520.014 kb on - strandat 1520.032 kb on + strandat 1520.037 kb on + strandat 1520.075 kb on + strandat 1520.176 kb on + strand, within SGL_RS08975at 1520.328 kb on - strand, within SGL_RS08975at 1520.424 kb on + strand, within SGL_RS08975at 1520.503 kb on + strand, within SGL_RS08975at 1520.582 kb on - strand, within SGL_RS08975at 1520.582 kb on - strand, within SGL_RS08975at 1520.776 kb on + strand, within SGL_RS08975at 1520.840 kb on + strand, within SGL_RS08975at 1520.913 kb on + strand, within SGL_RS08975at 1520.965 kb on - strand, within SGL_RS08975at 1520.984 kb on + strand, within SGL_RS08975at 1521.023 kb on - strandat 1521.029 kb on - strandat 1521.090 kb on + strandat 1521.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,519,049 + +1.1
1,519,064 - +1.7
1,519,087 - +2.5
1,519,118 - -0.2
1,519,118 - -0.6
1,519,370 - SGL_RS08970 0.30 -0.1
1,519,549 + SGL_RS08970 0.52 -0.5
1,519,551 + SGL_RS08970 0.52 -0.1
1,519,907 + +0.3
1,519,997 + -0.8
1,520,014 - -0.2
1,520,032 + +1.1
1,520,037 + +1.4
1,520,075 + +1.5
1,520,176 + SGL_RS08975 0.15 +1.5
1,520,328 - SGL_RS08975 0.29 +2.3
1,520,424 + SGL_RS08975 0.38 +1.9
1,520,503 + SGL_RS08975 0.45 +1.9
1,520,582 - SGL_RS08975 0.52 +1.5
1,520,582 - SGL_RS08975 0.52 +2.1
1,520,776 + SGL_RS08975 0.70 +1.6
1,520,840 + SGL_RS08975 0.76 +1.9
1,520,913 + SGL_RS08975 0.83 +1.9
1,520,965 - SGL_RS08975 0.88 +1.3
1,520,984 + SGL_RS08975 0.89 +2.0
1,521,023 - +1.8
1,521,029 - +1.9
1,521,090 + +1.0
1,521,197 - -1.2

Or see this region's nucleotide sequence