Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08850

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08845 and SGL_RS08850 are separated by 447 nucleotidesSGL_RS08850 and SGL_RS08855 are separated by 256 nucleotides SGL_RS08845: SGL_RS08845 - LysR family transcriptional regulator, at 1,487,445 to 1,488,395 _RS08845 SGL_RS08850: SGL_RS08850 - Na+/H+ antiporter, at 1,488,843 to 1,490,426 _RS08850 SGL_RS08855: SGL_RS08855 - response regulator transcription factor, at 1,490,683 to 1,491,363 _RS08855 Position (kb) 1488 1489 1490 1491Strain fitness (log2 ratio) -3 -2 -1 0 1at 1487.951 kb on + strand, within SGL_RS08845at 1488.010 kb on - strand, within SGL_RS08845at 1488.117 kb on + strand, within SGL_RS08845at 1488.368 kb on + strandat 1488.512 kb on + strandat 1488.528 kb on + strandat 1488.536 kb on - strandat 1488.647 kb on + strandat 1488.647 kb on + strandat 1488.701 kb on + strandat 1488.749 kb on + strandat 1488.749 kb on + strandat 1488.786 kb on - strandat 1488.841 kb on - strandat 1488.915 kb on + strandat 1488.933 kb on - strandat 1488.935 kb on + strandat 1488.943 kb on - strandat 1488.943 kb on - strandat 1488.999 kb on + strandat 1489.004 kb on + strand, within SGL_RS08850at 1489.004 kb on + strand, within SGL_RS08850at 1489.084 kb on - strand, within SGL_RS08850at 1489.170 kb on - strand, within SGL_RS08850at 1489.407 kb on - strand, within SGL_RS08850at 1489.407 kb on - strand, within SGL_RS08850at 1489.416 kb on + strand, within SGL_RS08850at 1489.429 kb on - strand, within SGL_RS08850at 1489.452 kb on - strand, within SGL_RS08850at 1489.454 kb on + strand, within SGL_RS08850at 1489.534 kb on - strand, within SGL_RS08850at 1489.547 kb on - strand, within SGL_RS08850at 1489.799 kb on + strand, within SGL_RS08850at 1489.876 kb on + strand, within SGL_RS08850at 1490.098 kb on + strand, within SGL_RS08850at 1490.106 kb on - strand, within SGL_RS08850at 1490.174 kb on + strand, within SGL_RS08850at 1490.585 kb on + strandat 1490.783 kb on - strand, within SGL_RS08855at 1490.873 kb on + strand, within SGL_RS08855at 1490.975 kb on - strand, within SGL_RS08855at 1491.059 kb on + strand, within SGL_RS08855at 1491.152 kb on + strand, within SGL_RS08855

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,487,951 + SGL_RS08845 0.53 -2.6
1,488,010 - SGL_RS08845 0.59 -2.6
1,488,117 + SGL_RS08845 0.71 -3.5
1,488,368 + -3.5
1,488,512 + -1.7
1,488,528 + -2.3
1,488,536 - -3.6
1,488,647 + +0.2
1,488,647 + -1.0
1,488,701 + -1.4
1,488,749 + -0.3
1,488,749 + -1.0
1,488,786 - -0.0
1,488,841 - -1.4
1,488,915 + -0.4
1,488,933 - +0.6
1,488,935 + +0.1
1,488,943 - -1.9
1,488,943 - -0.5
1,488,999 + +0.5
1,489,004 + SGL_RS08850 0.10 +0.3
1,489,004 + SGL_RS08850 0.10 +0.4
1,489,084 - SGL_RS08850 0.15 -1.0
1,489,170 - SGL_RS08850 0.21 -0.3
1,489,407 - SGL_RS08850 0.36 -1.5
1,489,407 - SGL_RS08850 0.36 +0.1
1,489,416 + SGL_RS08850 0.36 -0.1
1,489,429 - SGL_RS08850 0.37 -0.3
1,489,452 - SGL_RS08850 0.38 -0.2
1,489,454 + SGL_RS08850 0.39 +0.3
1,489,534 - SGL_RS08850 0.44 +0.0
1,489,547 - SGL_RS08850 0.44 +0.3
1,489,799 + SGL_RS08850 0.60 -1.7
1,489,876 + SGL_RS08850 0.65 +0.0
1,490,098 + SGL_RS08850 0.79 +0.3
1,490,106 - SGL_RS08850 0.80 +0.0
1,490,174 + SGL_RS08850 0.84 -1.4
1,490,585 + -0.0
1,490,783 - SGL_RS08855 0.15 -0.5
1,490,873 + SGL_RS08855 0.28 +0.0
1,490,975 - SGL_RS08855 0.43 +0.3
1,491,059 + SGL_RS08855 0.55 -0.6
1,491,152 + SGL_RS08855 0.69 +0.4

Or see this region's nucleotide sequence