Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08845 and SGL_RS08850 are separated by 447 nucleotides SGL_RS08850 and SGL_RS08855 are separated by 256 nucleotides
SGL_RS08845: SGL_RS08845 - LysR family transcriptional regulator, at 1,487,445 to 1,488,395
_RS08845
SGL_RS08850: SGL_RS08850 - Na+/H+ antiporter, at 1,488,843 to 1,490,426
_RS08850
SGL_RS08855: SGL_RS08855 - response regulator transcription factor, at 1,490,683 to 1,491,363
_RS08855
Position (kb)
1488
1489
1490
1491 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1487.951 kb on + strand, within SGL_RS08845 at 1488.010 kb on - strand, within SGL_RS08845 at 1488.117 kb on + strand, within SGL_RS08845 at 1488.368 kb on + strand at 1488.512 kb on + strand at 1488.528 kb on + strand at 1488.536 kb on - strand at 1488.647 kb on + strand at 1488.647 kb on + strand at 1488.701 kb on + strand at 1488.749 kb on + strand at 1488.749 kb on + strand at 1488.786 kb on - strand at 1488.841 kb on - strand at 1488.915 kb on + strand at 1488.933 kb on - strand at 1488.935 kb on + strand at 1488.943 kb on - strand at 1488.943 kb on - strand at 1488.999 kb on + strand at 1489.004 kb on + strand, within SGL_RS08850 at 1489.004 kb on + strand, within SGL_RS08850 at 1489.084 kb on - strand, within SGL_RS08850 at 1489.170 kb on - strand, within SGL_RS08850 at 1489.407 kb on - strand, within SGL_RS08850 at 1489.407 kb on - strand, within SGL_RS08850 at 1489.416 kb on + strand, within SGL_RS08850 at 1489.429 kb on - strand, within SGL_RS08850 at 1489.452 kb on - strand, within SGL_RS08850 at 1489.454 kb on + strand, within SGL_RS08850 at 1489.534 kb on - strand, within SGL_RS08850 at 1489.547 kb on - strand, within SGL_RS08850 at 1489.799 kb on + strand, within SGL_RS08850 at 1489.876 kb on + strand, within SGL_RS08850 at 1490.098 kb on + strand, within SGL_RS08850 at 1490.106 kb on - strand, within SGL_RS08850 at 1490.174 kb on + strand, within SGL_RS08850 at 1490.585 kb on + strand at 1490.783 kb on - strand, within SGL_RS08855 at 1490.873 kb on + strand, within SGL_RS08855 at 1490.975 kb on - strand, within SGL_RS08855 at 1491.059 kb on + strand, within SGL_RS08855 at 1491.152 kb on + strand, within SGL_RS08855
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 1,487,951 + SGL_RS08845 0.53 -2.6 1,488,010 - SGL_RS08845 0.59 -2.6 1,488,117 + SGL_RS08845 0.71 -3.5 1,488,368 + -3.5 1,488,512 + -1.7 1,488,528 + -2.3 1,488,536 - -3.6 1,488,647 + +0.2 1,488,647 + -1.0 1,488,701 + -1.4 1,488,749 + -0.3 1,488,749 + -1.0 1,488,786 - -0.0 1,488,841 - -1.4 1,488,915 + -0.4 1,488,933 - +0.6 1,488,935 + +0.1 1,488,943 - -1.9 1,488,943 - -0.5 1,488,999 + +0.5 1,489,004 + SGL_RS08850 0.10 +0.3 1,489,004 + SGL_RS08850 0.10 +0.4 1,489,084 - SGL_RS08850 0.15 -1.0 1,489,170 - SGL_RS08850 0.21 -0.3 1,489,407 - SGL_RS08850 0.36 -1.5 1,489,407 - SGL_RS08850 0.36 +0.1 1,489,416 + SGL_RS08850 0.36 -0.1 1,489,429 - SGL_RS08850 0.37 -0.3 1,489,452 - SGL_RS08850 0.38 -0.2 1,489,454 + SGL_RS08850 0.39 +0.3 1,489,534 - SGL_RS08850 0.44 +0.0 1,489,547 - SGL_RS08850 0.44 +0.3 1,489,799 + SGL_RS08850 0.60 -1.7 1,489,876 + SGL_RS08850 0.65 +0.0 1,490,098 + SGL_RS08850 0.79 +0.3 1,490,106 - SGL_RS08850 0.80 +0.0 1,490,174 + SGL_RS08850 0.84 -1.4 1,490,585 + -0.0 1,490,783 - SGL_RS08855 0.15 -0.5 1,490,873 + SGL_RS08855 0.28 +0.0 1,490,975 - SGL_RS08855 0.43 +0.3 1,491,059 + SGL_RS08855 0.55 -0.6 1,491,152 + SGL_RS08855 0.69 +0.4
Or see this region's nucleotide sequence