Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08780

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08775 and SGL_RS08780 are separated by 25 nucleotidesSGL_RS08780 and SGL_RS08785 are separated by 102 nucleotides SGL_RS08775: SGL_RS08775 - aspartate--tRNA ligase, at 1,472,149 to 1,473,948 _RS08775 SGL_RS08780: SGL_RS08780 - hypothetical protein, at 1,473,974 to 1,475,452 _RS08780 SGL_RS08785: SGL_RS08785 - GuaB3 family IMP dehydrogenase-related protein, at 1,475,555 to 1,476,718 _RS08785 Position (kb) 1473 1474 1475 1476Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1474.267 kb on + strand, within SGL_RS08780at 1474.485 kb on + strand, within SGL_RS08780at 1474.796 kb on + strand, within SGL_RS08780at 1475.001 kb on + strand, within SGL_RS08780at 1475.095 kb on + strand, within SGL_RS08780at 1475.212 kb on - strand, within SGL_RS08780at 1475.261 kb on + strand, within SGL_RS08780at 1475.551 kb on - strandat 1475.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,474,267 + SGL_RS08780 0.20 -2.5
1,474,485 + SGL_RS08780 0.35 -3.8
1,474,796 + SGL_RS08780 0.56 -4.0
1,475,001 + SGL_RS08780 0.69 -3.2
1,475,095 + SGL_RS08780 0.76 -4.2
1,475,212 - SGL_RS08780 0.84 -4.8
1,475,261 + SGL_RS08780 0.87 -3.2
1,475,551 - +0.3
1,475,551 - -1.9

Or see this region's nucleotide sequence