Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08410

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08405 and SGL_RS08410 are separated by 180 nucleotidesSGL_RS08410 and SGL_RS08415 are separated by 128 nucleotidesSGL_RS08415 and SGL_RS08420 are separated by 31 nucleotides SGL_RS08405: SGL_RS08405 - phosphate ABC transporter ATP-binding protein PstB, at 1,391,976 to 1,392,791 _RS08405 SGL_RS08410: SGL_RS08410 - peptidylprolyl isomerase, at 1,392,972 to 1,393,487 _RS08410 SGL_RS08415: SGL_RS08415 - 4a-hydroxytetrahydrobiopterin dehydratase, at 1,393,616 to 1,393,906 _RS08415 SGL_RS08420: SGL_RS08420 - DUF389 domain-containing protein, at 1,393,938 to 1,395,755 _RS08420 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -1 0 1at 1392.028 kb on - strandat 1392.045 kb on - strandat 1392.045 kb on - strandat 1392.075 kb on + strand, within SGL_RS08405at 1392.108 kb on + strand, within SGL_RS08405at 1392.422 kb on - strand, within SGL_RS08405at 1392.453 kb on + strand, within SGL_RS08405at 1392.522 kb on - strand, within SGL_RS08405at 1392.646 kb on + strand, within SGL_RS08405at 1392.660 kb on + strand, within SGL_RS08405at 1392.878 kb on + strandat 1392.893 kb on + strandat 1393.181 kb on - strand, within SGL_RS08410at 1393.309 kb on - strand, within SGL_RS08410at 1393.379 kb on - strand, within SGL_RS08410at 1393.693 kb on + strand, within SGL_RS08415at 1393.822 kb on + strand, within SGL_RS08415at 1393.892 kb on - strandat 1394.112 kb on + strandat 1394.181 kb on + strand, within SGL_RS08420at 1394.189 kb on - strand, within SGL_RS08420at 1394.323 kb on - strand, within SGL_RS08420at 1394.421 kb on + strand, within SGL_RS08420

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,392,028 - +0.6
1,392,045 - +0.3
1,392,045 - -0.2
1,392,075 + SGL_RS08405 0.12 -1.1
1,392,108 + SGL_RS08405 0.16 -0.4
1,392,422 - SGL_RS08405 0.55 +0.4
1,392,453 + SGL_RS08405 0.58 -0.3
1,392,522 - SGL_RS08405 0.67 +0.7
1,392,646 + SGL_RS08405 0.82 +0.8
1,392,660 + SGL_RS08405 0.84 +0.3
1,392,878 + -0.2
1,392,893 + +0.2
1,393,181 - SGL_RS08410 0.41 +0.4
1,393,309 - SGL_RS08410 0.65 +1.1
1,393,379 - SGL_RS08410 0.79 +1.4
1,393,693 + SGL_RS08415 0.26 +0.5
1,393,822 + SGL_RS08415 0.71 -0.1
1,393,892 - +0.8
1,394,112 + -0.3
1,394,181 + SGL_RS08420 0.13 -0.6
1,394,189 - SGL_RS08420 0.14 +0.1
1,394,323 - SGL_RS08420 0.21 +0.3
1,394,421 + SGL_RS08420 0.27 -1.1

Or see this region's nucleotide sequence