Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06970 and SGL_RS06975 are separated by 30 nucleotides SGL_RS06975 and SGL_RS06980 are separated by 35 nucleotides
SGL_RS06970: SGL_RS06970 - pentapeptide repeat-containing protein, at 1,091,698 to 1,092,894
_RS06970
SGL_RS06975: SGL_RS06975 - HAD-IA family hydrolase, at 1,092,925 to 1,093,590
_RS06975
SGL_RS06980: SGL_RS06980 - tRNA epoxyqueuosine(34) reductase QueG, at 1,093,626 to 1,094,495
_RS06980
Position (kb)
1092
1093
1094 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1091.937 kb on + strand, within SGL_RS06970 at 1091.937 kb on + strand, within SGL_RS06970 at 1091.967 kb on + strand, within SGL_RS06970 at 1091.970 kb on - strand, within SGL_RS06970 at 1091.972 kb on + strand, within SGL_RS06970 at 1091.980 kb on - strand, within SGL_RS06970 at 1092.007 kb on + strand, within SGL_RS06970 at 1092.050 kb on - strand, within SGL_RS06970 at 1092.052 kb on + strand, within SGL_RS06970 at 1092.060 kb on - strand, within SGL_RS06970 at 1092.060 kb on - strand, within SGL_RS06970 at 1092.116 kb on - strand, within SGL_RS06970 at 1092.141 kb on + strand, within SGL_RS06970 at 1092.178 kb on - strand, within SGL_RS06970 at 1092.329 kb on + strand, within SGL_RS06970 at 1092.447 kb on + strand, within SGL_RS06970 at 1092.449 kb on + strand, within SGL_RS06970 at 1092.487 kb on - strand, within SGL_RS06970 at 1092.622 kb on + strand, within SGL_RS06970 at 1092.632 kb on - strand, within SGL_RS06970 at 1092.755 kb on - strand, within SGL_RS06970 at 1092.779 kb on - strand at 1092.789 kb on - strand at 1092.800 kb on - strand at 1092.802 kb on + strand at 1092.903 kb on - strand at 1092.924 kb on - strand at 1092.991 kb on - strand at 1093.444 kb on + strand, within SGL_RS06975 at 1093.674 kb on - strand at 1093.706 kb on - strand at 1093.804 kb on - strand, within SGL_RS06980 at 1093.982 kb on - strand, within SGL_RS06980 at 1094.033 kb on - strand, within SGL_RS06980 at 1094.132 kb on - strand, within SGL_RS06980 at 1094.294 kb on + strand, within SGL_RS06980 at 1094.326 kb on + strand, within SGL_RS06980 at 1094.445 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 1,091,937 + SGL_RS06970 0.20 -0.1 1,091,937 + SGL_RS06970 0.20 +0.4 1,091,967 + SGL_RS06970 0.22 +0.2 1,091,970 - SGL_RS06970 0.23 -0.8 1,091,972 + SGL_RS06970 0.23 +0.0 1,091,980 - SGL_RS06970 0.24 +0.1 1,092,007 + SGL_RS06970 0.26 -1.1 1,092,050 - SGL_RS06970 0.29 -0.9 1,092,052 + SGL_RS06970 0.30 -0.0 1,092,060 - SGL_RS06970 0.30 -0.3 1,092,060 - SGL_RS06970 0.30 +0.1 1,092,116 - SGL_RS06970 0.35 +0.6 1,092,141 + SGL_RS06970 0.37 +0.5 1,092,178 - SGL_RS06970 0.40 +0.4 1,092,329 + SGL_RS06970 0.53 +0.1 1,092,447 + SGL_RS06970 0.63 -0.2 1,092,449 + SGL_RS06970 0.63 -1.2 1,092,487 - SGL_RS06970 0.66 +0.4 1,092,622 + SGL_RS06970 0.77 +0.3 1,092,632 - SGL_RS06970 0.78 -0.5 1,092,755 - SGL_RS06970 0.88 -0.1 1,092,779 - -0.0 1,092,789 - -0.8 1,092,800 - -0.3 1,092,802 + -0.3 1,092,903 - -0.0 1,092,924 - -0.3 1,092,991 - +0.7 1,093,444 + SGL_RS06975 0.78 +0.2 1,093,674 - +0.6 1,093,706 - +1.1 1,093,804 - SGL_RS06980 0.20 +0.3 1,093,982 - SGL_RS06980 0.41 +0.4 1,094,033 - SGL_RS06980 0.47 +0.4 1,094,132 - SGL_RS06980 0.58 +0.4 1,094,294 + SGL_RS06980 0.77 +1.0 1,094,326 + SGL_RS06980 0.80 +3.0 1,094,445 + +0.2
Or see this region's nucleotide sequence