Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06820

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06815 and SGL_RS06820 are separated by 26 nucleotidesSGL_RS06820 and SGL_RS06825 are separated by 5 nucleotidesSGL_RS06825 and SGL_RS06830 are separated by 20 nucleotidesSGL_RS06830 and SGL_RS06835 are separated by 2 nucleotidesSGL_RS06835 and SGL_RS06840 are separated by 40 nucleotides SGL_RS06815: SGL_RS06815 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 1,053,955 to 1,055,547 _RS06815 SGL_RS06820: SGL_RS06820 - hypothetical protein, at 1,055,574 to 1,056,113 _RS06820 SGL_RS06825: SGL_RS06825 - nucleotidyltransferase family protein, at 1,056,119 to 1,056,466 _RS06825 SGL_RS06830: SGL_RS06830 - type II toxin-antitoxin system HicA family toxin, at 1,056,487 to 1,056,717 _RS06830 SGL_RS06835: SGL_RS06835 - type II toxin-antitoxin system HicB family antitoxin, at 1,056,720 to 1,056,944 _RS06835 SGL_RS06840: SGL_RS06840 - Re/Si-specific NAD(P)(+) transhydrogenase subunit beta, at 1,056,985 to 1,058,427 _RS06840 Position (kb) 1055 1056 1057Strain fitness (log2 ratio) -1 0 1at 1054.574 kb on + strand, within SGL_RS06815at 1054.575 kb on - strand, within SGL_RS06815at 1054.771 kb on + strand, within SGL_RS06815at 1054.855 kb on + strand, within SGL_RS06815at 1054.886 kb on - strand, within SGL_RS06815at 1055.164 kb on - strand, within SGL_RS06815at 1055.168 kb on + strand, within SGL_RS06815at 1055.168 kb on + strand, within SGL_RS06815at 1055.260 kb on + strand, within SGL_RS06815at 1055.313 kb on - strand, within SGL_RS06815at 1055.353 kb on + strand, within SGL_RS06815at 1055.358 kb on + strand, within SGL_RS06815at 1055.365 kb on + strand, within SGL_RS06815at 1055.974 kb on + strand, within SGL_RS06820at 1056.716 kb on + strandat 1056.895 kb on + strand, within SGL_RS06835at 1057.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,054,574 + SGL_RS06815 0.39 +0.2
1,054,575 - SGL_RS06815 0.39 +1.3
1,054,771 + SGL_RS06815 0.51 -0.0
1,054,855 + SGL_RS06815 0.56 +0.5
1,054,886 - SGL_RS06815 0.58 -0.2
1,055,164 - SGL_RS06815 0.76 +0.8
1,055,168 + SGL_RS06815 0.76 +0.6
1,055,168 + SGL_RS06815 0.76 +0.4
1,055,260 + SGL_RS06815 0.82 +0.1
1,055,313 - SGL_RS06815 0.85 +1.2
1,055,353 + SGL_RS06815 0.88 -0.2
1,055,358 + SGL_RS06815 0.88 -0.1
1,055,365 + SGL_RS06815 0.89 -0.1
1,055,974 + SGL_RS06820 0.74 +1.4
1,056,716 + -0.0
1,056,895 + SGL_RS06835 0.78 +0.9
1,057,059 - -0.1

Or see this region's nucleotide sequence