Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06700

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS06695 and SGL_RS06700 are separated by 114 nucleotidesSGL_RS06700 and SGL_RS06705 are separated by 47 nucleotides SGL_RS06695: SGL_RS06695 - IAP75 family chloroplast envelope protein translocase, at 1,031,202 to 1,033,787 _RS06695 SGL_RS06700: SGL_RS06700 - peptide chain release factor 3, at 1,033,902 to 1,035,545 _RS06700 SGL_RS06705: SGL_RS06705 - SulP family inorganic anion transporter, at 1,035,593 to 1,037,089 _RS06705 Position (kb) 1033 1034 1035 1036Strain fitness (log2 ratio) -1 0 1 2at 1033.921 kb on + strandat 1034.043 kb on + strandat 1034.074 kb on - strand, within SGL_RS06700at 1034.144 kb on + strand, within SGL_RS06700at 1034.339 kb on - strand, within SGL_RS06700at 1034.390 kb on - strand, within SGL_RS06700at 1034.767 kb on + strand, within SGL_RS06700at 1034.792 kb on - strand, within SGL_RS06700at 1035.039 kb on + strand, within SGL_RS06700at 1035.189 kb on + strand, within SGL_RS06700at 1035.493 kb on - strandat 1035.662 kb on + strandat 1035.804 kb on + strand, within SGL_RS06705at 1035.961 kb on - strand, within SGL_RS06705at 1036.011 kb on + strand, within SGL_RS06705at 1036.165 kb on + strand, within SGL_RS06705at 1036.172 kb on - strand, within SGL_RS06705at 1036.379 kb on + strand, within SGL_RS06705at 1036.387 kb on - strand, within SGL_RS06705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
remove
1,033,921 + +2.0
1,034,043 + +1.4
1,034,074 - SGL_RS06700 0.10 +2.1
1,034,144 + SGL_RS06700 0.15 +2.0
1,034,339 - SGL_RS06700 0.27 +2.1
1,034,390 - SGL_RS06700 0.30 +1.7
1,034,767 + SGL_RS06700 0.53 +2.4
1,034,792 - SGL_RS06700 0.54 +2.2
1,035,039 + SGL_RS06700 0.69 +1.6
1,035,189 + SGL_RS06700 0.78 +1.9
1,035,493 - +1.9
1,035,662 + -1.4
1,035,804 + SGL_RS06705 0.14 +0.8
1,035,961 - SGL_RS06705 0.25 +0.0
1,036,011 + SGL_RS06705 0.28 +1.0
1,036,165 + SGL_RS06705 0.38 +0.5
1,036,172 - SGL_RS06705 0.39 +0.0
1,036,379 + SGL_RS06705 0.53 +0.6
1,036,387 - SGL_RS06705 0.53 -0.6

Or see this region's nucleotide sequence