Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06605

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06600 and SGL_RS06605 are separated by 215 nucleotidesSGL_RS06605 and SGL_RS06610 overlap by 4 nucleotidesSGL_RS06610 and SGL_RS06615 are separated by 156 nucleotides SGL_RS06600: SGL_RS06600 - anthranilate phosphoribosyltransferase family protein, at 1,010,710 to 1,011,759 _RS06600 SGL_RS06605: SGL_RS06605 - histidine phosphatase family protein, at 1,011,975 to 1,012,619 _RS06605 SGL_RS06610: SGL_RS06610 - RlpA-like double-psi beta-barrel domain-containing protein, at 1,012,616 to 1,012,888 _RS06610 SGL_RS06615: SGL_RS06615 - cell division protein FtsZ, at 1,013,045 to 1,014,337 _RS06615 Position (kb) 1011 1012 1013Strain fitness (log2 ratio) -1 0 1 2 3at 1011.007 kb on + strand, within SGL_RS06600at 1011.031 kb on + strand, within SGL_RS06600at 1011.098 kb on - strand, within SGL_RS06600at 1011.186 kb on + strand, within SGL_RS06600at 1011.214 kb on + strand, within SGL_RS06600at 1011.241 kb on + strand, within SGL_RS06600at 1011.477 kb on - strand, within SGL_RS06600at 1011.477 kb on - strand, within SGL_RS06600at 1011.514 kb on - strand, within SGL_RS06600at 1011.631 kb on - strand, within SGL_RS06600at 1012.034 kb on + strandat 1012.160 kb on + strand, within SGL_RS06605at 1012.213 kb on + strand, within SGL_RS06605at 1012.218 kb on + strand, within SGL_RS06605at 1012.221 kb on - strand, within SGL_RS06605at 1012.337 kb on - strand, within SGL_RS06605at 1012.346 kb on - strand, within SGL_RS06605at 1012.445 kb on - strand, within SGL_RS06605at 1012.479 kb on - strand, within SGL_RS06605at 1012.657 kb on + strand, within SGL_RS06610at 1012.759 kb on + strand, within SGL_RS06610

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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1,011,007 + SGL_RS06600 0.28 +0.6
1,011,031 + SGL_RS06600 0.31 +2.1
1,011,098 - SGL_RS06600 0.37 +1.9
1,011,186 + SGL_RS06600 0.45 +2.8
1,011,214 + SGL_RS06600 0.48 +2.3
1,011,241 + SGL_RS06600 0.51 +1.3
1,011,477 - SGL_RS06600 0.73 +2.3
1,011,477 - SGL_RS06600 0.73 +1.7
1,011,514 - SGL_RS06600 0.77 +2.1
1,011,631 - SGL_RS06600 0.88 +2.1
1,012,034 + +3.0
1,012,160 + SGL_RS06605 0.29 +1.7
1,012,213 + SGL_RS06605 0.37 +2.0
1,012,218 + SGL_RS06605 0.38 +2.2
1,012,221 - SGL_RS06605 0.38 +3.0
1,012,337 - SGL_RS06605 0.56 +2.7
1,012,346 - SGL_RS06605 0.58 +2.5
1,012,445 - SGL_RS06605 0.73 +2.8
1,012,479 - SGL_RS06605 0.78 +1.8
1,012,657 + SGL_RS06610 0.15 +1.1
1,012,759 + SGL_RS06610 0.52 +0.9

Or see this region's nucleotide sequence