Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06350 and SGL_RS06355 are separated by 158 nucleotides SGL_RS06355 and SGL_RS06360 are separated by 59 nucleotides SGL_RS06360 and SGL_RS06365 are separated by 348 nucleotides
SGL_RS06350: SGL_RS06350 - BMC domain-containing protein, at 955,805 to 956,116
_RS06350
SGL_RS06355: SGL_RS06355 - carbon dioxide-concentrating mechanism protein CcmK, at 956,275 to 956,613
_RS06355
SGL_RS06360: SGL_RS06360 - glycerate kinase, at 956,673 to 957,788
_RS06360
SGL_RS06365: SGL_RS06365 - iron uptake porin, at 958,137 to 960,029
_RS06365
Position (kb) 956
957
958 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 955.749 kb on - strand at 955.841 kb on - strand, within SGL_RS06350 at 956.014 kb on - strand, within SGL_RS06350 at 956.146 kb on + strand at 956.161 kb on - strand at 956.266 kb on - strand at 956.349 kb on + strand, within SGL_RS06355 at 956.349 kb on + strand, within SGL_RS06355 at 956.408 kb on + strand, within SGL_RS06355 at 956.493 kb on + strand, within SGL_RS06355 at 956.637 kb on + strand at 956.778 kb on + strand at 956.817 kb on - strand, within SGL_RS06360 at 956.867 kb on - strand, within SGL_RS06360 at 956.926 kb on - strand, within SGL_RS06360 at 957.093 kb on + strand, within SGL_RS06360 at 957.273 kb on + strand, within SGL_RS06360 at 957.273 kb on + strand, within SGL_RS06360 at 957.395 kb on + strand, within SGL_RS06360 at 957.497 kb on + strand, within SGL_RS06360 at 957.497 kb on + strand, within SGL_RS06360 at 957.560 kb on + strand, within SGL_RS06360 at 957.627 kb on + strand, within SGL_RS06360 at 958.005 kb on + strand at 958.005 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 955,749 - +1.0 955,841 - SGL_RS06350 0.12 +1.7 956,014 - SGL_RS06350 0.67 +1.9 956,146 + +1.4 956,161 - -0.7 956,266 - +1.9 956,349 + SGL_RS06355 0.22 +1.9 956,349 + SGL_RS06355 0.22 +2.2 956,408 + SGL_RS06355 0.39 +1.9 956,493 + SGL_RS06355 0.64 +3.9 956,637 + +0.3 956,778 + -0.7 956,817 - SGL_RS06360 0.13 -2.3 956,867 - SGL_RS06360 0.17 -0.6 956,926 - SGL_RS06360 0.23 -0.7 957,093 + SGL_RS06360 0.38 +0.0 957,273 + SGL_RS06360 0.54 -2.1 957,273 + SGL_RS06360 0.54 -0.1 957,395 + SGL_RS06360 0.65 +0.0 957,497 + SGL_RS06360 0.74 +0.3 957,497 + SGL_RS06360 0.74 -0.7 957,560 + SGL_RS06360 0.79 -1.0 957,627 + SGL_RS06360 0.85 -0.0 958,005 + -4.2 958,005 + -3.5
Or see this region's nucleotide sequence