Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06350

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06345 and SGL_RS06350 are separated by 377 nucleotidesSGL_RS06350 and SGL_RS06355 are separated by 158 nucleotidesSGL_RS06355 and SGL_RS06360 are separated by 59 nucleotides SGL_RS06345: SGL_RS06345 - alpha-ketoacid dehydrogenase subunit beta, at 954,453 to 955,427 _RS06345 SGL_RS06350: SGL_RS06350 - BMC domain-containing protein, at 955,805 to 956,116 _RS06350 SGL_RS06355: SGL_RS06355 - carbon dioxide-concentrating mechanism protein CcmK, at 956,275 to 956,613 _RS06355 SGL_RS06360: SGL_RS06360 - glycerate kinase, at 956,673 to 957,788 _RS06360 Position (kb) 955 956 957Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 955.749 kb on - strandat 955.841 kb on - strand, within SGL_RS06350at 956.014 kb on - strand, within SGL_RS06350at 956.146 kb on + strandat 956.161 kb on - strandat 956.266 kb on - strandat 956.349 kb on + strand, within SGL_RS06355at 956.349 kb on + strand, within SGL_RS06355at 956.408 kb on + strand, within SGL_RS06355at 956.493 kb on + strand, within SGL_RS06355at 956.637 kb on + strandat 956.778 kb on + strandat 956.817 kb on - strand, within SGL_RS06360at 956.867 kb on - strand, within SGL_RS06360at 956.926 kb on - strand, within SGL_RS06360at 957.093 kb on + strand, within SGL_RS06360

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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955,749 - +1.0
955,841 - SGL_RS06350 0.12 +1.7
956,014 - SGL_RS06350 0.67 +1.9
956,146 + +1.4
956,161 - -0.7
956,266 - +1.9
956,349 + SGL_RS06355 0.22 +1.9
956,349 + SGL_RS06355 0.22 +2.2
956,408 + SGL_RS06355 0.39 +1.9
956,493 + SGL_RS06355 0.64 +3.9
956,637 + +0.3
956,778 + -0.7
956,817 - SGL_RS06360 0.13 -2.3
956,867 - SGL_RS06360 0.17 -0.6
956,926 - SGL_RS06360 0.23 -0.7
957,093 + SGL_RS06360 0.38 +0.0

Or see this region's nucleotide sequence