Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06255

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06250 and SGL_RS06255 are separated by 63 nucleotidesSGL_RS06255 and SGL_RS20120 are separated by 64 nucleotidesSGL_RS20120 and SGL_RS06260 are separated by 62 nucleotidesSGL_RS06260 and SGL_RS06265 are separated by 111 nucleotides SGL_RS06250: SGL_RS06250 - hypothetical protein, at 930,148 to 930,843 _RS06250 SGL_RS06255: SGL_RS06255 - Tic20 family protein, at 930,907 to 931,389 _RS06255 SGL_RS20120: SGL_RS20120 - hypothetical protein, at 931,454 to 931,576 _RS20120 SGL_RS06260: SGL_RS06260 - 2Fe-2S iron-sulfur cluster-binding protein, at 931,639 to 931,959 _RS06260 SGL_RS06265: SGL_RS06265 - class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE, at 932,071 to 933,063 _RS06265 Position (kb) 930 931 932Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 930.047 kb on - strandat 930.179 kb on - strandat 930.181 kb on - strandat 930.217 kb on + strandat 930.223 kb on + strand, within SGL_RS06250at 930.225 kb on - strand, within SGL_RS06250at 930.231 kb on - strand, within SGL_RS06250at 930.453 kb on - strand, within SGL_RS06250at 930.504 kb on - strand, within SGL_RS06250at 930.563 kb on - strand, within SGL_RS06250at 930.763 kb on + strand, within SGL_RS06250at 930.964 kb on + strand, within SGL_RS06255at 930.972 kb on - strand, within SGL_RS06255at 931.051 kb on - strand, within SGL_RS06255at 931.054 kb on + strand, within SGL_RS06255at 931.141 kb on - strand, within SGL_RS06255at 931.540 kb on + strand, within SGL_RS20120at 931.558 kb on - strand, within SGL_RS20120at 931.641 kb on + strandat 931.655 kb on - strandat 931.675 kb on + strand, within SGL_RS06260at 931.682 kb on + strand, within SGL_RS06260at 931.688 kb on - strand, within SGL_RS06260at 931.712 kb on - strand, within SGL_RS06260at 931.771 kb on - strand, within SGL_RS06260at 931.778 kb on - strand, within SGL_RS06260at 931.843 kb on + strand, within SGL_RS06260at 931.864 kb on + strand, within SGL_RS06260at 931.872 kb on - strand, within SGL_RS06260at 931.877 kb on - strand, within SGL_RS06260at 931.973 kb on - strandat 932.129 kb on - strandat 932.166 kb on + strandat 932.180 kb on - strand, within SGL_RS06265at 932.217 kb on + strand, within SGL_RS06265at 932.283 kb on + strand, within SGL_RS06265at 932.341 kb on + strand, within SGL_RS06265at 932.349 kb on - strand, within SGL_RS06265at 932.367 kb on + strand, within SGL_RS06265

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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930,047 - +0.3
930,179 - +0.6
930,181 - -0.1
930,217 + -0.1
930,223 + SGL_RS06250 0.11 +0.4
930,225 - SGL_RS06250 0.11 +0.3
930,231 - SGL_RS06250 0.12 +0.3
930,453 - SGL_RS06250 0.44 -0.2
930,504 - SGL_RS06250 0.51 -1.1
930,563 - SGL_RS06250 0.60 -0.6
930,763 + SGL_RS06250 0.88 -0.5
930,964 + SGL_RS06255 0.12 +1.8
930,972 - SGL_RS06255 0.13 +1.4
931,051 - SGL_RS06255 0.30 +1.0
931,054 + SGL_RS06255 0.30 +1.4
931,141 - SGL_RS06255 0.48 +1.3
931,540 + SGL_RS20120 0.70 -0.1
931,558 - SGL_RS20120 0.85 -0.4
931,641 + -1.1
931,655 - +0.2
931,675 + SGL_RS06260 0.11 -0.8
931,682 + SGL_RS06260 0.13 -0.1
931,688 - SGL_RS06260 0.15 -0.1
931,712 - SGL_RS06260 0.23 -0.3
931,771 - SGL_RS06260 0.41 -1.2
931,778 - SGL_RS06260 0.43 +0.6
931,843 + SGL_RS06260 0.64 -0.9
931,864 + SGL_RS06260 0.70 -0.5
931,872 - SGL_RS06260 0.73 -3.3
931,877 - SGL_RS06260 0.74 +1.1
931,973 - +0.0
932,129 - +0.5
932,166 + +0.2
932,180 - SGL_RS06265 0.11 -0.3
932,217 + SGL_RS06265 0.15 +0.2
932,283 + SGL_RS06265 0.21 +0.4
932,341 + SGL_RS06265 0.27 +0.3
932,349 - SGL_RS06265 0.28 +0.4
932,367 + SGL_RS06265 0.30 -1.0

Or see this region's nucleotide sequence