Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06140

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06135 and SGL_RS06140 are separated by 362 nucleotidesSGL_RS06140 and SGL_RS06145 are separated by 412 nucleotides SGL_RS06135: SGL_RS06135 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 909,603 to 910,994 _RS06135 SGL_RS06140: SGL_RS06140 - threonine ammonia-lyase, biosynthetic, at 911,357 to 912,883 _RS06140 SGL_RS06145: SGL_RS06145 - cell division protein SepF, at 913,296 to 913,856 _RS06145 Position (kb) 911 912 913Strain fitness (log2 ratio) -2 -1 0 1 2at 910.364 kb on + strand, within SGL_RS06135at 910.364 kb on + strand, within SGL_RS06135at 910.372 kb on - strand, within SGL_RS06135at 910.401 kb on + strand, within SGL_RS06135at 910.521 kb on - strand, within SGL_RS06135at 910.565 kb on - strand, within SGL_RS06135at 910.595 kb on - strand, within SGL_RS06135at 910.605 kb on + strand, within SGL_RS06135at 910.607 kb on + strand, within SGL_RS06135at 910.615 kb on - strand, within SGL_RS06135at 910.623 kb on - strand, within SGL_RS06135at 910.658 kb on - strand, within SGL_RS06135at 910.747 kb on - strand, within SGL_RS06135at 910.758 kb on + strand, within SGL_RS06135at 910.774 kb on - strand, within SGL_RS06135at 910.856 kb on - strandat 911.037 kb on + strandat 911.203 kb on - strandat 911.272 kb on + strandat 911.272 kb on + strandat 911.277 kb on + strandat 911.280 kb on - strandat 911.285 kb on - strandat 911.403 kb on - strandat 911.597 kb on - strand, within SGL_RS06140at 911.597 kb on - strand, within SGL_RS06140at 911.605 kb on + strand, within SGL_RS06140at 911.666 kb on - strand, within SGL_RS06140at 911.735 kb on + strand, within SGL_RS06140at 911.735 kb on + strand, within SGL_RS06140at 911.863 kb on - strand, within SGL_RS06140at 911.905 kb on - strand, within SGL_RS06140at 911.922 kb on + strand, within SGL_RS06140at 911.930 kb on - strand, within SGL_RS06140at 912.048 kb on + strand, within SGL_RS06140at 912.050 kb on + strand, within SGL_RS06140at 912.156 kb on + strand, within SGL_RS06140at 912.176 kb on + strand, within SGL_RS06140at 912.330 kb on - strand, within SGL_RS06140at 912.334 kb on + strand, within SGL_RS06140at 912.406 kb on - strand, within SGL_RS06140at 912.479 kb on + strand, within SGL_RS06140at 912.524 kb on - strand, within SGL_RS06140at 912.598 kb on - strand, within SGL_RS06140at 912.696 kb on + strand, within SGL_RS06140at 912.709 kb on - strand, within SGL_RS06140at 912.812 kb on - strandat 912.821 kb on + strandat 912.948 kb on + strandat 912.948 kb on + strandat 912.977 kb on - strandat 913.803 kb on - strandat 913.869 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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910,364 + SGL_RS06135 0.55 +0.4
910,364 + SGL_RS06135 0.55 -0.3
910,372 - SGL_RS06135 0.55 +0.2
910,401 + SGL_RS06135 0.57 +0.6
910,521 - SGL_RS06135 0.66 +2.4
910,565 - SGL_RS06135 0.69 -0.1
910,595 - SGL_RS06135 0.71 +0.7
910,605 + SGL_RS06135 0.72 +0.6
910,607 + SGL_RS06135 0.72 +0.3
910,615 - SGL_RS06135 0.73 +0.2
910,623 - SGL_RS06135 0.73 +0.4
910,658 - SGL_RS06135 0.76 -0.1
910,747 - SGL_RS06135 0.82 +0.6
910,758 + SGL_RS06135 0.83 +0.5
910,774 - SGL_RS06135 0.84 +0.8
910,856 - +0.9
911,037 + +0.6
911,203 - +1.4
911,272 + -1.2
911,272 + -0.5
911,277 + +0.3
911,280 - -0.1
911,285 - +1.2
911,403 - -0.1
911,597 - SGL_RS06140 0.16 -0.5
911,597 - SGL_RS06140 0.16 +1.0
911,605 + SGL_RS06140 0.16 +2.0
911,666 - SGL_RS06140 0.20 +0.9
911,735 + SGL_RS06140 0.25 +0.2
911,735 + SGL_RS06140 0.25 +0.9
911,863 - SGL_RS06140 0.33 +0.4
911,905 - SGL_RS06140 0.36 +1.1
911,922 + SGL_RS06140 0.37 +0.6
911,930 - SGL_RS06140 0.38 +1.1
912,048 + SGL_RS06140 0.45 +1.8
912,050 + SGL_RS06140 0.45 +1.1
912,156 + SGL_RS06140 0.52 +0.6
912,176 + SGL_RS06140 0.54 +1.3
912,330 - SGL_RS06140 0.64 +1.5
912,334 + SGL_RS06140 0.64 -0.4
912,406 - SGL_RS06140 0.69 -1.1
912,479 + SGL_RS06140 0.73 +0.9
912,524 - SGL_RS06140 0.76 +0.6
912,598 - SGL_RS06140 0.81 +1.0
912,696 + SGL_RS06140 0.88 +0.4
912,709 - SGL_RS06140 0.89 +1.3
912,812 - +0.2
912,821 + +0.4
912,948 + -1.4
912,948 + -1.7
912,977 - -0.7
913,803 - -2.5
913,869 + -1.1

Or see this region's nucleotide sequence