Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05310

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05305 and SGL_RS05310 are separated by 55 nucleotidesSGL_RS05310 and SGL_RS05315 are separated by 100 nucleotidesSGL_RS05315 and SGL_RS05320 are separated by 68 nucleotides SGL_RS05305: SGL_RS05305 - trans-splicing intein-formed DNA polymerase III subunit alpha C-terminal partner DnaE-C, at 736,435 to 737,811 _RS05305 SGL_RS05310: SGL_RS05310 - hypothetical protein, at 737,867 to 738,808 _RS05310 SGL_RS05315: SGL_RS05315 - hypothetical protein, at 738,909 to 739,613 _RS05315 SGL_RS05320: SGL_RS05320 - PBP1A family penicillin-binding protein, at 739,682 to 741,931 _RS05320 Position (kb) 737 738 739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 738.498 kb on - strand, within SGL_RS05310at 738.714 kb on + strandat 738.735 kb on + strandat 738.762 kb on - strandat 738.944 kb on + strandat 738.964 kb on - strandat 738.985 kb on + strand, within SGL_RS05315at 739.036 kb on - strand, within SGL_RS05315at 739.183 kb on + strand, within SGL_RS05315at 739.193 kb on + strand, within SGL_RS05315at 739.217 kb on + strand, within SGL_RS05315at 739.368 kb on - strand, within SGL_RS05315at 739.448 kb on - strand, within SGL_RS05315at 739.483 kb on + strand, within SGL_RS05315at 739.521 kb on + strand, within SGL_RS05315at 739.529 kb on - strand, within SGL_RS05315at 739.530 kb on + strand, within SGL_RS05315at 739.760 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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738,498 - SGL_RS05310 0.67 +0.9
738,714 + +0.6
738,735 + +0.6
738,762 - +1.2
738,944 + +0.6
738,964 - -0.1
738,985 + SGL_RS05315 0.11 -0.0
739,036 - SGL_RS05315 0.18 -0.1
739,183 + SGL_RS05315 0.39 +0.3
739,193 + SGL_RS05315 0.40 +1.4
739,217 + SGL_RS05315 0.44 +0.6
739,368 - SGL_RS05315 0.65 +0.6
739,448 - SGL_RS05315 0.76 -0.2
739,483 + SGL_RS05315 0.81 -1.7
739,521 + SGL_RS05315 0.87 +0.3
739,529 - SGL_RS05315 0.88 +0.4
739,530 + SGL_RS05315 0.88 -0.6
739,760 + -3.9

Or see this region's nucleotide sequence