Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05150

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS05140 and SGL_RS05145 are separated by 24 nucleotidesSGL_RS05145 and SGL_RS05150 are separated by 242 nucleotidesSGL_RS05150 and SGL_RS05155 are separated by 37 nucleotides SGL_RS05140: SGL_RS05140 - divergent PAP2 family protein, at 704,390 to 704,845 _RS05140 SGL_RS05145: SGL_RS05145 - hypothetical protein, at 704,870 to 705,064 _RS05145 SGL_RS05150: SGL_RS05150 - TetR/AcrR family transcriptional regulator, at 705,307 to 706,017 _RS05150 SGL_RS05155: SGL_RS05155 - hypothetical protein, at 706,055 to 707,131 _RS05155 Position (kb) 705 706 707Strain fitness (log2 ratio) -1 0 1at 704.868 kb on - strandat 705.380 kb on + strand, within SGL_RS05150at 705.380 kb on + strand, within SGL_RS05150at 705.388 kb on - strand, within SGL_RS05150at 705.677 kb on - strand, within SGL_RS05150at 705.778 kb on + strand, within SGL_RS05150at 705.910 kb on + strand, within SGL_RS05150at 705.956 kb on - strandat 706.020 kb on - strandat 706.020 kb on - strandat 706.075 kb on - strandat 706.184 kb on - strand, within SGL_RS05155at 706.302 kb on + strand, within SGL_RS05155at 706.348 kb on + strand, within SGL_RS05155at 706.385 kb on - strand, within SGL_RS05155at 706.782 kb on + strand, within SGL_RS05155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
remove
704,868 - -1.1
705,380 + SGL_RS05150 0.10 -1.1
705,380 + SGL_RS05150 0.10 -0.8
705,388 - SGL_RS05150 0.11 -1.4
705,677 - SGL_RS05150 0.52 -0.8
705,778 + SGL_RS05150 0.66 -0.8
705,910 + SGL_RS05150 0.85 -1.1
705,956 - -0.1
706,020 - -0.8
706,020 - -0.1
706,075 - -1.1
706,184 - SGL_RS05155 0.12 -0.4
706,302 + SGL_RS05155 0.23 -0.9
706,348 + SGL_RS05155 0.27 -1.2
706,385 - SGL_RS05155 0.31 +0.0
706,782 + SGL_RS05155 0.68 +0.0

Or see this region's nucleotide sequence