Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04820

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04815 and SGL_RS04820 are separated by 50 nucleotidesSGL_RS04820 and SGL_RS04825 are separated by 303 nucleotidesSGL_RS04825 and SGL_RS04830 are separated by 119 nucleotides SGL_RS04815: SGL_RS04815 - hypothetical protein, at 629,398 to 630,504 _RS04815 SGL_RS04820: SGL_RS04820 - LysR family transcriptional regulator, at 630,555 to 631,592 _RS04820 SGL_RS04825: SGL_RS04825 - hypothetical protein, at 631,896 to 632,093 _RS04825 SGL_RS04830: SGL_RS04830 - PhzF family phenazine biosynthesis protein, at 632,213 to 633,157 _RS04830 Position (kb) 630 631 632Strain fitness (log2 ratio) -1 0 1 2at 629.681 kb on - strand, within SGL_RS04815at 630.053 kb on + strand, within SGL_RS04815at 630.292 kb on + strand, within SGL_RS04815at 630.538 kb on + strandat 630.670 kb on - strand, within SGL_RS04820at 630.741 kb on - strand, within SGL_RS04820at 631.440 kb on + strand, within SGL_RS04820at 631.659 kb on - strandat 631.869 kb on + strandat 631.917 kb on - strand, within SGL_RS04825at 631.928 kb on - strand, within SGL_RS04825at 632.066 kb on - strand, within SGL_RS04825at 632.095 kb on + strandat 632.102 kb on - strandat 632.111 kb on - strandat 632.221 kb on - strandat 632.242 kb on - strandat 632.242 kb on - strandat 632.464 kb on + strand, within SGL_RS04830at 632.521 kb on - strand, within SGL_RS04830at 632.570 kb on - strand, within SGL_RS04830

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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629,681 - SGL_RS04815 0.26 -0.9
630,053 + SGL_RS04815 0.59 -0.5
630,292 + SGL_RS04815 0.81 -0.5
630,538 + +0.4
630,670 - SGL_RS04820 0.11 +2.3
630,741 - SGL_RS04820 0.18 -1.2
631,440 + SGL_RS04820 0.85 -0.8
631,659 - +0.4
631,869 + -0.4
631,917 - SGL_RS04825 0.11 +0.7
631,928 - SGL_RS04825 0.16 +1.0
632,066 - SGL_RS04825 0.86 +0.3
632,095 + +0.1
632,102 - +0.6
632,111 - +0.2
632,221 - +0.2
632,242 - +1.0
632,242 - -0.1
632,464 + SGL_RS04830 0.27 -0.8
632,521 - SGL_RS04830 0.33 +0.8
632,570 - SGL_RS04830 0.38 +0.5

Or see this region's nucleotide sequence