Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04790 and SGL_RS04795 are separated by 12 nucleotides SGL_RS04795 and SGL_RS04800 are separated by 304 nucleotides SGL_RS04800 and SGL_RS04805 are separated by 67 nucleotides
SGL_RS04790: SGL_RS04790 - penicillin-binding protein 2, at 622,300 to 624,123
_RS04790
SGL_RS04795: SGL_RS04795 - hypothetical protein, at 624,136 to 624,594
_RS04795
SGL_RS04800: SGL_RS04800 - (Fe-S)-binding protein, at 624,899 to 626,281
_RS04800
SGL_RS04805: SGL_RS04805 - hypothetical protein, at 626,349 to 627,425
_RS04805
Position (kb) 624
625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 624.257 kb on + strand, within SGL_RS04795 at 625.107 kb on + strand, within SGL_RS04800 at 625.127 kb on + strand, within SGL_RS04800 at 625.445 kb on - strand, within SGL_RS04800 at 625.505 kb on + strand, within SGL_RS04800 at 625.505 kb on + strand, within SGL_RS04800 at 625.924 kb on + strand, within SGL_RS04800 at 625.954 kb on - strand, within SGL_RS04800 at 625.984 kb on - strand, within SGL_RS04800 at 625.990 kb on - strand, within SGL_RS04800 at 625.996 kb on - strand, within SGL_RS04800 at 626.061 kb on - strand, within SGL_RS04800 at 626.061 kb on - strand, within SGL_RS04800 at 626.076 kb on + strand, within SGL_RS04800 at 626.179 kb on - strand at 626.355 kb on + strand at 626.363 kb on - strand at 626.369 kb on - strand at 626.435 kb on - strand at 626.531 kb on + strand, within SGL_RS04805 at 626.574 kb on + strand, within SGL_RS04805 at 626.654 kb on - strand, within SGL_RS04805 at 626.719 kb on + strand, within SGL_RS04805 at 626.737 kb on - strand, within SGL_RS04805 at 626.953 kb on + strand, within SGL_RS04805 at 627.199 kb on - strand, within SGL_RS04805 at 627.223 kb on - strand, within SGL_RS04805
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 624,257 + SGL_RS04795 0.26 -0.8 625,107 + SGL_RS04800 0.15 +0.7 625,127 + SGL_RS04800 0.16 +1.0 625,445 - SGL_RS04800 0.39 +0.1 625,505 + SGL_RS04800 0.44 +0.7 625,505 + SGL_RS04800 0.44 +0.3 625,924 + SGL_RS04800 0.74 +0.0 625,954 - SGL_RS04800 0.76 +0.4 625,984 - SGL_RS04800 0.78 +0.8 625,990 - SGL_RS04800 0.79 +2.9 625,996 - SGL_RS04800 0.79 +0.4 626,061 - SGL_RS04800 0.84 +1.1 626,061 - SGL_RS04800 0.84 +0.4 626,076 + SGL_RS04800 0.85 +0.5 626,179 - +1.1 626,355 + -0.3 626,363 - +0.0 626,369 - +0.7 626,435 - +0.1 626,531 + SGL_RS04805 0.17 -1.4 626,574 + SGL_RS04805 0.21 -0.8 626,654 - SGL_RS04805 0.28 -0.2 626,719 + SGL_RS04805 0.34 -0.1 626,737 - SGL_RS04805 0.36 -2.0 626,953 + SGL_RS04805 0.56 +0.0 627,199 - SGL_RS04805 0.79 -0.4 627,223 - SGL_RS04805 0.81 +0.0
Or see this region's nucleotide sequence