Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04710

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04705 and SGL_RS18705 are separated by 145 nucleotidesSGL_RS18705 and SGL_RS04710 are separated by 242 nucleotidesSGL_RS04710 and SGL_RS04715 overlap by 1 nucleotides SGL_RS04705: SGL_RS04705 - ComEC/Rec2 family competence protein, at 606,465 to 608,594 _RS04705 SGL_RS18705: SGL_RS18705 - IS1 family transposase, at 608,740 to 609,226 _RS18705 SGL_RS04710: SGL_RS04710 - GNAT family N-acetyltransferase, at 609,469 to 610,053 _RS04710 SGL_RS04715: SGL_RS04715 - hypothetical protein, at 610,053 to 610,487 _RS04715 Position (kb) 609 610 611Strain fitness (log2 ratio) -1 0 1 2at 608.544 kb on - strandat 608.579 kb on + strandat 608.597 kb on + strandat 608.605 kb on - strandat 608.795 kb on + strand, within SGL_RS18705at 609.137 kb on + strand, within SGL_RS18705at 609.344 kb on - strandat 609.601 kb on + strand, within SGL_RS04710at 609.727 kb on + strand, within SGL_RS04710at 609.968 kb on - strand, within SGL_RS04710at 610.114 kb on - strand, within SGL_RS04715at 610.255 kb on + strand, within SGL_RS04715at 610.256 kb on - strand, within SGL_RS04715at 610.461 kb on + strandat 610.468 kb on + strandat 610.558 kb on + strandat 610.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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608,544 - -0.0
608,579 + -0.2
608,597 + -0.6
608,605 - -0.4
608,795 + SGL_RS18705 0.11 +0.2
609,137 + SGL_RS18705 0.82 -0.3
609,344 - +0.4
609,601 + SGL_RS04710 0.23 +2.1
609,727 + SGL_RS04710 0.44 +2.1
609,968 - SGL_RS04710 0.85 +2.2
610,114 - SGL_RS04715 0.14 +0.4
610,255 + SGL_RS04715 0.46 -0.4
610,256 - SGL_RS04715 0.47 -0.8
610,461 + -0.9
610,468 + -0.2
610,558 + +0.1
610,810 - +0.0

Or see this region's nucleotide sequence