Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04585 and SGL_RS04590 are separated by 33 nucleotides SGL_RS04590 and SGL_RS04595 overlap by 4 nucleotides SGL_RS04595 and SGL_RS04600 are separated by 43 nucleotides SGL_RS04600 and SGL_RS04605 are separated by 75 nucleotides
SGL_RS04585: SGL_RS04585 - response regulator, at 579,787 to 580,194
_RS04585
SGL_RS04590: SGL_RS04590 - zinc-dependent peptidase, at 580,228 to 581,055
_RS04590
SGL_RS04595: SGL_RS04595 - PPC domain-containing protein, at 581,052 to 581,474
_RS04595
SGL_RS04600: SGL_RS04600 - hypothetical protein, at 581,518 to 582,162
_RS04600
SGL_RS04605: SGL_RS04605 - hypothetical protein, at 582,238 to 582,477
_RS04605
Position (kb) 581
582 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 580.057 kb on + strand, within SGL_RS04585 at 580.106 kb on - strand, within SGL_RS04585 at 580.118 kb on - strand, within SGL_RS04585 at 580.197 kb on - strand at 580.507 kb on + strand, within SGL_RS04590 at 580.507 kb on + strand, within SGL_RS04590 at 580.585 kb on - strand, within SGL_RS04590 at 580.665 kb on + strand, within SGL_RS04590 at 581.038 kb on - strand at 581.071 kb on - strand at 581.116 kb on + strand, within SGL_RS04595 at 581.156 kb on + strand, within SGL_RS04595 at 581.443 kb on - strand at 581.443 kb on - strand at 581.491 kb on - strand at 581.539 kb on + strand at 581.544 kb on + strand at 581.544 kb on + strand at 581.552 kb on - strand at 581.588 kb on + strand, within SGL_RS04600 at 581.588 kb on + strand, within SGL_RS04600 at 581.618 kb on - strand, within SGL_RS04600 at 581.652 kb on + strand, within SGL_RS04600 at 581.700 kb on + strand, within SGL_RS04600 at 581.708 kb on - strand, within SGL_RS04600 at 581.724 kb on + strand, within SGL_RS04600 at 581.731 kb on - strand, within SGL_RS04600 at 581.902 kb on + strand, within SGL_RS04600 at 581.995 kb on + strand, within SGL_RS04600 at 581.995 kb on + strand, within SGL_RS04600 at 582.173 kb on + strand at 582.180 kb on + strand at 582.367 kb on + strand, within SGL_RS04605 at 582.392 kb on + strand, within SGL_RS04605 at 582.400 kb on - strand, within SGL_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 580,057 + SGL_RS04585 0.66 -0.1 580,106 - SGL_RS04585 0.78 +1.3 580,118 - SGL_RS04585 0.81 +0.0 580,197 - +0.4 580,507 + SGL_RS04590 0.34 +0.3 580,507 + SGL_RS04590 0.34 +0.1 580,585 - SGL_RS04590 0.43 -0.2 580,665 + SGL_RS04590 0.53 +0.1 581,038 - -0.2 581,071 - +0.1 581,116 + SGL_RS04595 0.15 +1.0 581,156 + SGL_RS04595 0.25 +0.9 581,443 - +0.4 581,443 - -0.3 581,491 - -0.2 581,539 + +0.9 581,544 + -2.5 581,544 + +0.6 581,552 - -1.1 581,588 + SGL_RS04600 0.11 -0.4 581,588 + SGL_RS04600 0.11 -2.1 581,618 - SGL_RS04600 0.16 -0.9 581,652 + SGL_RS04600 0.21 -1.1 581,700 + SGL_RS04600 0.28 -2.3 581,708 - SGL_RS04600 0.29 -0.6 581,724 + SGL_RS04600 0.32 -1.2 581,731 - SGL_RS04600 0.33 -3.0 581,902 + SGL_RS04600 0.60 -2.5 581,995 + SGL_RS04600 0.74 -3.9 581,995 + SGL_RS04600 0.74 -1.1 582,173 + -5.0 582,180 + -2.9 582,367 + SGL_RS04605 0.54 -3.5 582,392 + SGL_RS04605 0.64 -1.2 582,400 - SGL_RS04605 0.68 -1.4
Or see this region's nucleotide sequence