Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03960 and SGL_RS03965 are separated by 177 nucleotides SGL_RS03965 and SGL_RS03970 overlap by 21 nucleotides
SGL_RS03960: SGL_RS03960 - CHAT domain-containing protein, at 440,610 to 441,986
_RS03960
SGL_RS03965: SGL_RS03965 - R3H domain-containing nucleic acid-binding protein, at 442,164 to 443,933
_RS03965
SGL_RS03970: SGL_RS03970 - thiamine phosphate synthase, at 443,913 to 444,944
_RS03970
Position (kb) 442
443
444 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 441.359 kb on + strand, within SGL_RS03960 at 441.359 kb on + strand, within SGL_RS03960 at 441.359 kb on + strand, within SGL_RS03960 at 441.363 kb on + strand, within SGL_RS03960 at 441.403 kb on + strand, within SGL_RS03960 at 441.408 kb on + strand, within SGL_RS03960 at 441.422 kb on + strand, within SGL_RS03960 at 441.462 kb on + strand, within SGL_RS03960 at 441.579 kb on + strand, within SGL_RS03960 at 441.676 kb on + strand, within SGL_RS03960 at 441.731 kb on + strand, within SGL_RS03960 at 441.733 kb on - strand, within SGL_RS03960 at 441.740 kb on + strand, within SGL_RS03960 at 441.842 kb on + strand, within SGL_RS03960 at 441.857 kb on - strand at 441.961 kb on + strand at 442.047 kb on + strand at 442.146 kb on - strand at 442.232 kb on + strand at 442.309 kb on - strand at 442.406 kb on + strand, within SGL_RS03965 at 442.515 kb on + strand, within SGL_RS03965 at 442.533 kb on - strand, within SGL_RS03965 at 442.729 kb on - strand, within SGL_RS03965 at 442.729 kb on - strand, within SGL_RS03965 at 442.744 kb on + strand, within SGL_RS03965 at 442.744 kb on + strand, within SGL_RS03965 at 442.752 kb on - strand, within SGL_RS03965 at 442.752 kb on - strand, within SGL_RS03965 at 442.869 kb on + strand, within SGL_RS03965 at 442.940 kb on + strand, within SGL_RS03965 at 443.076 kb on + strand, within SGL_RS03965 at 443.093 kb on - strand, within SGL_RS03965 at 443.198 kb on + strand, within SGL_RS03965 at 443.358 kb on + strand, within SGL_RS03965 at 443.363 kb on + strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.525 kb on + strand, within SGL_RS03965 at 443.561 kb on + strand, within SGL_RS03965 at 443.926 kb on - strand at 443.966 kb on + strand at 444.013 kb on - strand at 444.018 kb on - strand, within SGL_RS03970 at 444.072 kb on - strand, within SGL_RS03970 at 444.144 kb on + strand, within SGL_RS03970 at 444.152 kb on - strand, within SGL_RS03970 at 444.161 kb on + strand, within SGL_RS03970 at 444.426 kb on - strand, within SGL_RS03970 at 444.568 kb on + strand, within SGL_RS03970 at 444.623 kb on - strand, within SGL_RS03970 at 444.664 kb on - strand, within SGL_RS03970 at 444.783 kb on - strand, within SGL_RS03970 at 444.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 441,359 + SGL_RS03960 0.54 +1.1 441,359 + SGL_RS03960 0.54 +0.3 441,359 + SGL_RS03960 0.54 -0.1 441,363 + SGL_RS03960 0.55 +0.3 441,403 + SGL_RS03960 0.58 +0.6 441,408 + SGL_RS03960 0.58 -0.6 441,422 + SGL_RS03960 0.59 +0.4 441,462 + SGL_RS03960 0.62 -0.6 441,579 + SGL_RS03960 0.70 +0.7 441,676 + SGL_RS03960 0.77 +0.6 441,731 + SGL_RS03960 0.81 +0.3 441,733 - SGL_RS03960 0.82 +0.3 441,740 + SGL_RS03960 0.82 -0.7 441,842 + SGL_RS03960 0.89 +0.8 441,857 - +0.7 441,961 + -0.1 442,047 + +1.2 442,146 - +4.2 442,232 + +3.5 442,309 - +4.0 442,406 + SGL_RS03965 0.14 +3.7 442,515 + SGL_RS03965 0.20 +4.2 442,533 - SGL_RS03965 0.21 +3.4 442,729 - SGL_RS03965 0.32 +4.0 442,729 - SGL_RS03965 0.32 +3.7 442,744 + SGL_RS03965 0.33 +4.3 442,744 + SGL_RS03965 0.33 +3.7 442,752 - SGL_RS03965 0.33 +4.1 442,752 - SGL_RS03965 0.33 +3.7 442,869 + SGL_RS03965 0.40 +4.0 442,940 + SGL_RS03965 0.44 +4.4 443,076 + SGL_RS03965 0.52 +4.2 443,093 - SGL_RS03965 0.52 +4.3 443,198 + SGL_RS03965 0.58 +1.9 443,358 + SGL_RS03965 0.67 +4.1 443,363 + SGL_RS03965 0.68 +4.1 443,371 - SGL_RS03965 0.68 +3.5 443,371 - SGL_RS03965 0.68 +3.8 443,371 - SGL_RS03965 0.68 +4.5 443,525 + SGL_RS03965 0.77 +3.5 443,561 + SGL_RS03965 0.79 +4.3 443,926 - +4.0 443,966 + -0.0 444,013 - -0.6 444,018 - SGL_RS03970 0.10 -0.0 444,072 - SGL_RS03970 0.15 -0.6 444,144 + SGL_RS03970 0.22 -0.0 444,152 - SGL_RS03970 0.23 -1.0 444,161 + SGL_RS03970 0.24 -0.6 444,426 - SGL_RS03970 0.50 -1.0 444,568 + SGL_RS03970 0.63 -0.0 444,623 - SGL_RS03970 0.69 -1.0 444,664 - SGL_RS03970 0.73 -0.6 444,783 - SGL_RS03970 0.84 -1.0 444,899 - -1.6
Or see this region's nucleotide sequence