Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03290 and SGL_RS03295 are separated by 233 nucleotides SGL_RS03295 and SGL_RS03300 are separated by 317 nucleotides SGL_RS03300 and SGL_RS03305 are separated by 48 nucleotides
SGL_RS03290: SGL_RS03290 - LapA family protein, at 302,786 to 303,190
_RS03290
SGL_RS03295: SGL_RS03295 - hypothetical protein, at 303,424 to 303,621
_RS03295
SGL_RS03300: SGL_RS03300 - pilus motility taxis protein HmpF, at 303,939 to 305,546
_RS03300
SGL_RS03305: SGL_RS03305 - CO2 hydration protein, at 305,595 to 306,824
_RS03305
Position (kb) 303
304
305
306 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 302.973 kb on - strand, within SGL_RS03290 at 303.064 kb on - strand, within SGL_RS03290 at 303.142 kb on + strand, within SGL_RS03290 at 303.344 kb on - strand at 303.403 kb on - strand at 303.648 kb on - strand at 303.710 kb on - strand at 303.732 kb on - strand at 303.863 kb on - strand at 303.922 kb on + strand at 304.034 kb on + strand at 304.042 kb on - strand at 304.083 kb on + strand at 304.111 kb on + strand, within SGL_RS03300 at 304.119 kb on - strand, within SGL_RS03300 at 304.137 kb on + strand, within SGL_RS03300 at 304.144 kb on + strand, within SGL_RS03300 at 304.161 kb on + strand, within SGL_RS03300 at 304.335 kb on - strand, within SGL_RS03300 at 304.335 kb on - strand, within SGL_RS03300 at 304.341 kb on + strand, within SGL_RS03300 at 304.478 kb on + strand, within SGL_RS03300 at 304.478 kb on - strand, within SGL_RS03300 at 304.482 kb on + strand, within SGL_RS03300 at 304.558 kb on - strand, within SGL_RS03300 at 305.018 kb on - strand, within SGL_RS03300 at 305.468 kb on + strand at 306.266 kb on - strand, within SGL_RS03305 at 306.380 kb on + strand, within SGL_RS03305 at 306.393 kb on - strand, within SGL_RS03305 at 306.406 kb on + strand, within SGL_RS03305 at 306.499 kb on - strand, within SGL_RS03305
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 302,973 - SGL_RS03290 0.46 -1.3 303,064 - SGL_RS03290 0.69 -4.0 303,142 + SGL_RS03290 0.88 -0.5 303,344 - -1.0 303,403 - -1.8 303,648 - -0.5 303,710 - -2.0 303,732 - +0.3 303,863 - +0.3 303,922 + +3.2 304,034 + +2.6 304,042 - +3.1 304,083 + +2.5 304,111 + SGL_RS03300 0.11 +2.6 304,119 - SGL_RS03300 0.11 +3.2 304,137 + SGL_RS03300 0.12 +2.9 304,144 + SGL_RS03300 0.13 +3.3 304,161 + SGL_RS03300 0.14 +2.8 304,335 - SGL_RS03300 0.25 +3.1 304,335 - SGL_RS03300 0.25 +3.3 304,341 + SGL_RS03300 0.25 +2.8 304,478 + SGL_RS03300 0.34 +3.3 304,478 - SGL_RS03300 0.34 +2.5 304,482 + SGL_RS03300 0.34 +3.0 304,558 - SGL_RS03300 0.38 +3.0 305,018 - SGL_RS03300 0.67 +4.0 305,468 + +1.6 306,266 - SGL_RS03305 0.55 +0.4 306,380 + SGL_RS03305 0.64 +0.3 306,393 - SGL_RS03305 0.65 +1.7 306,406 + SGL_RS03305 0.66 +1.2 306,499 - SGL_RS03305 0.73 -0.4
Or see this region's nucleotide sequence