Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03220 and SGL_RS03225 are separated by 225 nucleotides SGL_RS03225 and SGL_RS03230 are separated by 85 nucleotides
SGL_RS03220: SGL_RS03220 - Rpn family recombination-promoting nuclease/putative transposase, at 285,144 to 285,938
_RS03220
SGL_RS03225: SGL_RS03225 - NAD(P)H-quinone oxidoreductase subunit 4, at 286,164 to 287,843
_RS03225
SGL_RS03230: SGL_RS03230 - MFS transporter, at 287,929 to 289,104
_RS03230
Position (kb) 286
287
288 Strain fitness (log2 ratio) -1
0
1
2 at 285.360 kb on + strand, within SGL_RS03220 at 285.370 kb on + strand, within SGL_RS03220 at 285.380 kb on + strand, within SGL_RS03220 at 285.380 kb on + strand, within SGL_RS03220 at 286.017 kb on - strand at 286.018 kb on - strand at 286.281 kb on - strand at 286.428 kb on + strand, within SGL_RS03225 at 286.428 kb on + strand, within SGL_RS03225 at 286.565 kb on - strand, within SGL_RS03225 at 286.723 kb on - strand, within SGL_RS03225 at 286.732 kb on + strand, within SGL_RS03225 at 286.745 kb on + strand, within SGL_RS03225 at 286.751 kb on - strand, within SGL_RS03225 at 286.763 kb on - strand, within SGL_RS03225 at 286.794 kb on - strand, within SGL_RS03225 at 286.809 kb on + strand, within SGL_RS03225 at 286.886 kb on + strand, within SGL_RS03225 at 287.060 kb on - strand, within SGL_RS03225 at 287.065 kb on - strand, within SGL_RS03225 at 287.087 kb on - strand, within SGL_RS03225 at 287.087 kb on - strand, within SGL_RS03225 at 287.187 kb on - strand, within SGL_RS03225 at 287.219 kb on - strand, within SGL_RS03225 at 287.224 kb on + strand, within SGL_RS03225 at 287.229 kb on + strand, within SGL_RS03225 at 287.472 kb on - strand, within SGL_RS03225 at 287.515 kb on + strand, within SGL_RS03225 at 287.533 kb on - strand, within SGL_RS03225 at 287.627 kb on + strand, within SGL_RS03225 at 287.659 kb on + strand, within SGL_RS03225 at 287.728 kb on - strand at 287.779 kb on - strand at 287.784 kb on + strand at 287.784 kb on + strand at 287.791 kb on - strand at 288.040 kb on + strand at 288.126 kb on - strand, within SGL_RS03230 at 288.162 kb on - strand, within SGL_RS03230 at 288.317 kb on + strand, within SGL_RS03230 at 288.405 kb on + strand, within SGL_RS03230 at 288.555 kb on + strand, within SGL_RS03230 at 288.563 kb on - strand, within SGL_RS03230 at 288.683 kb on - strand, within SGL_RS03230 at 288.743 kb on + strand, within SGL_RS03230 at 288.757 kb on - strand, within SGL_RS03230 at 288.763 kb on + strand, within SGL_RS03230
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 285,360 + SGL_RS03220 0.27 +1.0 285,370 + SGL_RS03220 0.28 -0.4 285,380 + SGL_RS03220 0.30 +0.1 285,380 + SGL_RS03220 0.30 +0.6 286,017 - +0.2 286,018 - +0.3 286,281 - +2.4 286,428 + SGL_RS03225 0.16 +1.4 286,428 + SGL_RS03225 0.16 +1.6 286,565 - SGL_RS03225 0.24 +1.9 286,723 - SGL_RS03225 0.33 +1.7 286,732 + SGL_RS03225 0.34 +0.7 286,745 + SGL_RS03225 0.35 +0.6 286,751 - SGL_RS03225 0.35 +0.7 286,763 - SGL_RS03225 0.36 +1.5 286,794 - SGL_RS03225 0.38 +1.7 286,809 + SGL_RS03225 0.38 +1.3 286,886 + SGL_RS03225 0.43 +0.7 287,060 - SGL_RS03225 0.53 +1.8 287,065 - SGL_RS03225 0.54 +1.5 287,087 - SGL_RS03225 0.55 +0.9 287,087 - SGL_RS03225 0.55 +1.3 287,187 - SGL_RS03225 0.61 +0.9 287,219 - SGL_RS03225 0.63 +1.4 287,224 + SGL_RS03225 0.63 +2.0 287,229 + SGL_RS03225 0.63 +1.7 287,472 - SGL_RS03225 0.78 +1.6 287,515 + SGL_RS03225 0.80 +0.8 287,533 - SGL_RS03225 0.81 +1.5 287,627 + SGL_RS03225 0.87 +0.8 287,659 + SGL_RS03225 0.89 +1.6 287,728 - +1.3 287,779 - +0.0 287,784 + +0.4 287,784 + +0.5 287,791 - +0.6 288,040 + +0.5 288,126 - SGL_RS03230 0.17 +0.1 288,162 - SGL_RS03230 0.20 +0.5 288,317 + SGL_RS03230 0.33 -0.0 288,405 + SGL_RS03230 0.40 +0.7 288,555 + SGL_RS03230 0.53 +0.7 288,563 - SGL_RS03230 0.54 -0.6 288,683 - SGL_RS03230 0.64 +0.5 288,743 + SGL_RS03230 0.69 -0.3 288,757 - SGL_RS03230 0.70 +0.3 288,763 + SGL_RS03230 0.71 +0.2
Or see this region's nucleotide sequence