Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02900 and SGL_RS02905 are separated by 46 nucleotides SGL_RS02905 and SGL_RS02910 are separated by 145 nucleotides
SGL_RS02900: SGL_RS02900 - ankyrin repeat domain-containing protein, at 221,742 to 223,067
_RS02900
SGL_RS02905: SGL_RS02905 - Tab2/Atab2 family RNA-binding protein, at 223,114 to 223,596
_RS02905
SGL_RS02910: SGL_RS02910 - linear amide C-N hydrolase, at 223,742 to 224,806
_RS02910
Position (kb) 223
224 Strain fitness (log2 ratio) -1
0
1
2
3 at 222.296 kb on - strand, within SGL_RS02900 at 222.399 kb on - strand, within SGL_RS02900 at 222.423 kb on - strand, within SGL_RS02900 at 222.536 kb on + strand, within SGL_RS02900 at 222.581 kb on - strand, within SGL_RS02900 at 222.581 kb on - strand, within SGL_RS02900 at 222.581 kb on - strand, within SGL_RS02900 at 222.581 kb on - strand, within SGL_RS02900 at 222.581 kb on - strand, within SGL_RS02900 at 222.608 kb on - strand, within SGL_RS02900 at 222.631 kb on - strand, within SGL_RS02900 at 222.671 kb on + strand, within SGL_RS02900 at 222.671 kb on + strand, within SGL_RS02900 at 222.674 kb on - strand, within SGL_RS02900 at 222.679 kb on - strand, within SGL_RS02900 at 222.708 kb on - strand, within SGL_RS02900 at 222.713 kb on - strand, within SGL_RS02900 at 222.767 kb on - strand, within SGL_RS02900 at 222.885 kb on + strand, within SGL_RS02900 at 222.890 kb on + strand, within SGL_RS02900 at 223.034 kb on - strand at 223.045 kb on - strand at 223.105 kb on + strand at 223.124 kb on - strand at 223.143 kb on + strand at 223.209 kb on + strand, within SGL_RS02905 at 223.222 kb on - strand, within SGL_RS02905 at 223.227 kb on + strand, within SGL_RS02905 at 223.242 kb on + strand, within SGL_RS02905 at 223.288 kb on + strand, within SGL_RS02905 at 223.385 kb on - strand, within SGL_RS02905 at 223.412 kb on + strand, within SGL_RS02905 at 223.445 kb on + strand, within SGL_RS02905 at 223.465 kb on - strand, within SGL_RS02905 at 223.471 kb on + strand, within SGL_RS02905 at 223.575 kb on + strand at 223.576 kb on - strand at 223.727 kb on - strand at 223.728 kb on - strand at 223.828 kb on + strand at 223.831 kb on - strand at 223.863 kb on - strand, within SGL_RS02910 at 223.986 kb on + strand, within SGL_RS02910 at 223.989 kb on - strand, within SGL_RS02910 at 223.994 kb on - strand, within SGL_RS02910 at 224.038 kb on - strand, within SGL_RS02910 at 224.155 kb on - strand, within SGL_RS02910 at 224.166 kb on - strand, within SGL_RS02910 at 224.314 kb on + strand, within SGL_RS02910 at 224.337 kb on + strand, within SGL_RS02910 at 224.486 kb on - strand, within SGL_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 222,296 - SGL_RS02900 0.42 -0.4 222,399 - SGL_RS02900 0.50 +0.2 222,423 - SGL_RS02900 0.51 +0.2 222,536 + SGL_RS02900 0.60 +0.1 222,581 - SGL_RS02900 0.63 +0.6 222,581 - SGL_RS02900 0.63 +0.7 222,581 - SGL_RS02900 0.63 +1.1 222,581 - SGL_RS02900 0.63 +0.3 222,581 - SGL_RS02900 0.63 +0.9 222,608 - SGL_RS02900 0.65 +0.2 222,631 - SGL_RS02900 0.67 +0.9 222,671 + SGL_RS02900 0.70 +0.9 222,671 + SGL_RS02900 0.70 +0.5 222,674 - SGL_RS02900 0.70 -0.2 222,679 - SGL_RS02900 0.71 +0.5 222,708 - SGL_RS02900 0.73 +1.6 222,713 - SGL_RS02900 0.73 +0.4 222,767 - SGL_RS02900 0.77 -0.4 222,885 + SGL_RS02900 0.86 +0.7 222,890 + SGL_RS02900 0.87 +0.3 223,034 - +0.4 223,045 - +0.9 223,105 + -0.7 223,124 - +2.8 223,143 + +1.6 223,209 + SGL_RS02905 0.20 +2.8 223,222 - SGL_RS02905 0.22 +2.5 223,227 + SGL_RS02905 0.23 +1.9 223,242 + SGL_RS02905 0.27 +1.9 223,288 + SGL_RS02905 0.36 +1.7 223,385 - SGL_RS02905 0.56 +2.4 223,412 + SGL_RS02905 0.62 +2.0 223,445 + SGL_RS02905 0.69 +3.2 223,465 - SGL_RS02905 0.73 +2.6 223,471 + SGL_RS02905 0.74 +2.7 223,575 + -0.1 223,576 - +2.8 223,727 - +1.7 223,728 - +0.3 223,828 + -0.5 223,831 - -0.4 223,863 - SGL_RS02910 0.11 -0.3 223,986 + SGL_RS02910 0.23 +1.0 223,989 - SGL_RS02910 0.23 +0.0 223,994 - SGL_RS02910 0.24 +0.4 224,038 - SGL_RS02910 0.28 +0.5 224,155 - SGL_RS02910 0.39 +0.7 224,166 - SGL_RS02910 0.40 -0.5 224,314 + SGL_RS02910 0.54 +0.1 224,337 + SGL_RS02910 0.56 +0.4 224,486 - SGL_RS02910 0.70 +0.0
Or see this region's nucleotide sequence