Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02660

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02655 and SGL_RS02660 are separated by 12 nucleotidesSGL_RS02660 and SGL_RS02665 are separated by 5 nucleotides SGL_RS02655: SGL_RS02655 - S41 family peptidase, at 168,533 to 169,921 _RS02655 SGL_RS02660: SGL_RS02660 - L-threonylcarbamoyladenylate synthase, at 169,934 to 170,566 _RS02660 SGL_RS02665: SGL_RS02665 - nickel pincer cofactor biosynthesis protein LarC, at 170,572 to 171,840 _RS02665 Position (kb) 169 170 171Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 169.156 kb on - strand, within SGL_RS02655at 169.362 kb on + strand, within SGL_RS02655at 169.369 kb on - strand, within SGL_RS02655at 169.542 kb on + strand, within SGL_RS02655at 169.585 kb on + strand, within SGL_RS02655at 169.761 kb on + strand, within SGL_RS02655at 169.969 kb on - strandat 170.164 kb on - strand, within SGL_RS02660at 170.351 kb on - strand, within SGL_RS02660at 170.377 kb on + strand, within SGL_RS02660at 170.458 kb on - strand, within SGL_RS02660at 170.482 kb on - strand, within SGL_RS02660at 171.136 kb on + strand, within SGL_RS02665at 171.514 kb on - strand, within SGL_RS02665at 171.520 kb on + strand, within SGL_RS02665

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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169,156 - SGL_RS02655 0.45 -2.8
169,362 + SGL_RS02655 0.60 -2.7
169,369 - SGL_RS02655 0.60 -2.4
169,542 + SGL_RS02655 0.73 -2.4
169,585 + SGL_RS02655 0.76 -2.6
169,761 + SGL_RS02655 0.88 -3.9
169,969 - +2.5
170,164 - SGL_RS02660 0.36 +2.4
170,351 - SGL_RS02660 0.66 +2.8
170,377 + SGL_RS02660 0.70 +1.8
170,458 - SGL_RS02660 0.83 +0.8
170,482 - SGL_RS02660 0.87 +1.7
171,136 + SGL_RS02665 0.44 -2.2
171,514 - SGL_RS02665 0.74 -2.7
171,520 + SGL_RS02665 0.75 -1.2

Or see this region's nucleotide sequence