Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01515

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01505 and SGL_RS01515 are separated by 714 nucleotidesSGL_RS01515 and SGL_RS19730 are separated by 31 nucleotidesSGL_RS19730 and SGL_RS19320 overlap by 53 nucleotidesSGL_RS19320 and SGL_RS01525 are separated by 327 nucleotides SGL_RS01505: SGL_RS01505 - hypothetical protein, at 26,745 to 27,242 _RS01505 SGL_RS01515: SGL_RS01515 - hypothetical protein, at 27,957 to 31,322 _RS01515 SGL_RS19730: SGL_RS19730 - DNA cytosine methyltransferase, at 31,354 to 31,461 _RS19730 SGL_RS19320: SGL_RS19320 - hypothetical protein, at 31,409 to 31,801 _RS19320 SGL_RS01525: SGL_RS01525 - cytidine deaminase, at 32,129 to 32,545 _RS01525 Position (kb) 27 28 29 30 31 32Strain fitness (log2 ratio) -1 0 1 2 3 4at 28.370 kb on - strand, within SGL_RS01515at 28.452 kb on + strand, within SGL_RS01515at 28.452 kb on + strand, within SGL_RS01515at 28.452 kb on + strand, within SGL_RS01515at 28.458 kb on - strand, within SGL_RS01515at 28.460 kb on - strand, within SGL_RS01515at 28.460 kb on - strand, within SGL_RS01515at 28.460 kb on - strand, within SGL_RS01515at 28.486 kb on + strand, within SGL_RS01515at 28.509 kb on + strand, within SGL_RS01515at 28.585 kb on - strand, within SGL_RS01515at 28.600 kb on + strand, within SGL_RS01515at 28.608 kb on - strand, within SGL_RS01515at 28.660 kb on + strand, within SGL_RS01515at 28.693 kb on + strand, within SGL_RS01515at 28.703 kb on + strand, within SGL_RS01515at 28.703 kb on + strand, within SGL_RS01515at 28.703 kb on + strand, within SGL_RS01515at 28.726 kb on + strand, within SGL_RS01515at 28.729 kb on - strand, within SGL_RS01515at 28.754 kb on + strand, within SGL_RS01515at 28.761 kb on + strand, within SGL_RS01515at 28.762 kb on - strand, within SGL_RS01515at 28.769 kb on - strand, within SGL_RS01515at 28.773 kb on + strand, within SGL_RS01515at 28.775 kb on - strand, within SGL_RS01515at 28.860 kb on - strand, within SGL_RS01515at 28.860 kb on - strand, within SGL_RS01515at 28.866 kb on + strand, within SGL_RS01515at 28.873 kb on + strand, within SGL_RS01515at 28.874 kb on + strand, within SGL_RS01515at 28.912 kb on + strand, within SGL_RS01515at 28.926 kb on - strand, within SGL_RS01515at 28.965 kb on + strand, within SGL_RS01515at 28.965 kb on + strand, within SGL_RS01515at 28.973 kb on - strand, within SGL_RS01515at 28.973 kb on - strand, within SGL_RS01515at 28.973 kb on - strand, within SGL_RS01515at 28.984 kb on + strand, within SGL_RS01515at 29.009 kb on - strand, within SGL_RS01515at 29.055 kb on + strand, within SGL_RS01515at 29.134 kb on + strand, within SGL_RS01515at 29.183 kb on + strand, within SGL_RS01515at 29.206 kb on - strand, within SGL_RS01515at 29.206 kb on - strand, within SGL_RS01515at 29.211 kb on - strand, within SGL_RS01515at 29.285 kb on + strand, within SGL_RS01515at 29.285 kb on + strand, within SGL_RS01515at 29.306 kb on + strand, within SGL_RS01515at 29.306 kb on + strand, within SGL_RS01515at 29.312 kb on + strand, within SGL_RS01515at 29.314 kb on - strand, within SGL_RS01515at 29.314 kb on - strand, within SGL_RS01515at 29.314 kb on - strand, within SGL_RS01515at 29.314 kb on - strand, within SGL_RS01515at 29.324 kb on - strand, within SGL_RS01515at 29.324 kb on - strand, within SGL_RS01515at 29.324 kb on - strand, within SGL_RS01515at 29.349 kb on - strand, within SGL_RS01515at 29.349 kb on - strand, within SGL_RS01515at 29.354 kb on - strand, within SGL_RS01515at 29.393 kb on - strand, within SGL_RS01515at 29.491 kb on + strand, within SGL_RS01515at 29.499 kb on - strand, within SGL_RS01515at 29.499 kb on - strand, within SGL_RS01515at 29.531 kb on - strand, within SGL_RS01515at 29.598 kb on - strand, within SGL_RS01515at 29.627 kb on - strand, within SGL_RS01515at 29.872 kb on + strand, within SGL_RS01515at 29.888 kb on + strand, within SGL_RS01515at 29.891 kb on - strand, within SGL_RS01515at 29.891 kb on - strand, within SGL_RS01515at 29.893 kb on + strand, within SGL_RS01515at 29.893 kb on - strand, within SGL_RS01515at 29.901 kb on - strand, within SGL_RS01515at 29.926 kb on + strand, within SGL_RS01515at 30.093 kb on + strand, within SGL_RS01515at 30.129 kb on - strand, within SGL_RS01515at 30.154 kb on + strand, within SGL_RS01515at 30.159 kb on + strand, within SGL_RS01515at 30.209 kb on - strand, within SGL_RS01515at 30.287 kb on - strand, within SGL_RS01515at 30.299 kb on - strand, within SGL_RS01515at 30.341 kb on + strand, within SGL_RS01515at 30.341 kb on + strand, within SGL_RS01515at 30.341 kb on + strand, within SGL_RS01515at 30.349 kb on - strand, within SGL_RS01515at 30.349 kb on - strand, within SGL_RS01515at 30.395 kb on + strand, within SGL_RS01515at 30.402 kb on - strand, within SGL_RS01515at 30.431 kb on - strand, within SGL_RS01515at 30.460 kb on - strand, within SGL_RS01515at 30.460 kb on - strand, within SGL_RS01515at 30.511 kb on - strand, within SGL_RS01515at 30.616 kb on + strand, within SGL_RS01515at 30.654 kb on + strand, within SGL_RS01515at 30.676 kb on + strand, within SGL_RS01515at 30.766 kb on - strand, within SGL_RS01515at 30.804 kb on + strand, within SGL_RS01515at 30.804 kb on + strand, within SGL_RS01515at 30.812 kb on - strand, within SGL_RS01515at 30.817 kb on - strand, within SGL_RS01515at 30.833 kb on - strand, within SGL_RS01515at 30.855 kb on + strand, within SGL_RS01515at 30.978 kb on + strand, within SGL_RS01515at 30.991 kb on - strandat 31.016 kb on + strandat 31.029 kb on - strandat 31.111 kb on + strandat 31.172 kb on + strandat 31.347 kb on + strandat 31.347 kb on + strandat 31.381 kb on - strand, within SGL_RS19730at 31.387 kb on - strand, within SGL_RS19730at 31.389 kb on - strand, within SGL_RS19730at 31.511 kb on - strand, within SGL_RS19320at 31.545 kb on + strand, within SGL_RS19320at 31.587 kb on - strand, within SGL_RS19320at 31.587 kb on - strand, within SGL_RS19320at 31.722 kb on - strand, within SGL_RS19320at 32.079 kb on - strandat 32.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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28,370 - SGL_RS01515 0.12 +2.6
28,452 + SGL_RS01515 0.15 +2.8
28,452 + SGL_RS01515 0.15 +2.4
28,452 + SGL_RS01515 0.15 +4.0
28,458 - SGL_RS01515 0.15 +2.4
28,460 - SGL_RS01515 0.15 +3.0
28,460 - SGL_RS01515 0.15 +3.1
28,460 - SGL_RS01515 0.15 +3.0
28,486 + SGL_RS01515 0.16 +3.1
28,509 + SGL_RS01515 0.16 +3.2
28,585 - SGL_RS01515 0.19 +3.9
28,600 + SGL_RS01515 0.19 +3.1
28,608 - SGL_RS01515 0.19 +3.4
28,660 + SGL_RS01515 0.21 +3.3
28,693 + SGL_RS01515 0.22 +2.3
28,703 + SGL_RS01515 0.22 +2.3
28,703 + SGL_RS01515 0.22 +3.2
28,703 + SGL_RS01515 0.22 +3.3
28,726 + SGL_RS01515 0.23 +3.2
28,729 - SGL_RS01515 0.23 +3.2
28,754 + SGL_RS01515 0.24 +2.6
28,761 + SGL_RS01515 0.24 +3.4
28,762 - SGL_RS01515 0.24 +3.3
28,769 - SGL_RS01515 0.24 +3.7
28,773 + SGL_RS01515 0.24 +2.4
28,775 - SGL_RS01515 0.24 +2.2
28,860 - SGL_RS01515 0.27 +3.2
28,860 - SGL_RS01515 0.27 +2.9
28,866 + SGL_RS01515 0.27 +3.3
28,873 + SGL_RS01515 0.27 +2.8
28,874 + SGL_RS01515 0.27 +1.8
28,912 + SGL_RS01515 0.28 +2.2
28,926 - SGL_RS01515 0.29 +3.2
28,965 + SGL_RS01515 0.30 +2.3
28,965 + SGL_RS01515 0.30 +3.3
28,973 - SGL_RS01515 0.30 +3.2
28,973 - SGL_RS01515 0.30 +2.8
28,973 - SGL_RS01515 0.30 +2.9
28,984 + SGL_RS01515 0.31 +2.5
29,009 - SGL_RS01515 0.31 +3.7
29,055 + SGL_RS01515 0.33 +3.3
29,134 + SGL_RS01515 0.35 +3.0
29,183 + SGL_RS01515 0.36 +3.6
29,206 - SGL_RS01515 0.37 +3.2
29,206 - SGL_RS01515 0.37 +3.2
29,211 - SGL_RS01515 0.37 +2.2
29,285 + SGL_RS01515 0.39 +3.5
29,285 + SGL_RS01515 0.39 +3.7
29,306 + SGL_RS01515 0.40 +2.6
29,306 + SGL_RS01515 0.40 +4.3
29,312 + SGL_RS01515 0.40 +3.4
29,314 - SGL_RS01515 0.40 +3.8
29,314 - SGL_RS01515 0.40 +3.2
29,314 - SGL_RS01515 0.40 +3.3
29,314 - SGL_RS01515 0.40 +3.1
29,324 - SGL_RS01515 0.41 +2.8
29,324 - SGL_RS01515 0.41 +3.5
29,324 - SGL_RS01515 0.41 +3.1
29,349 - SGL_RS01515 0.41 +3.6
29,349 - SGL_RS01515 0.41 +3.5
29,354 - SGL_RS01515 0.42 +2.5
29,393 - SGL_RS01515 0.43 +3.3
29,491 + SGL_RS01515 0.46 +3.2
29,499 - SGL_RS01515 0.46 +3.5
29,499 - SGL_RS01515 0.46 +3.7
29,531 - SGL_RS01515 0.47 +3.6
29,598 - SGL_RS01515 0.49 +2.5
29,627 - SGL_RS01515 0.50 +3.0
29,872 + SGL_RS01515 0.57 +3.5
29,888 + SGL_RS01515 0.57 +3.4
29,891 - SGL_RS01515 0.57 +3.1
29,891 - SGL_RS01515 0.57 +3.3
29,893 + SGL_RS01515 0.58 +2.9
29,893 - SGL_RS01515 0.58 +2.6
29,901 - SGL_RS01515 0.58 +3.8
29,926 + SGL_RS01515 0.58 +2.0
30,093 + SGL_RS01515 0.63 +3.1
30,129 - SGL_RS01515 0.65 +3.5
30,154 + SGL_RS01515 0.65 +3.1
30,159 + SGL_RS01515 0.65 +3.5
30,209 - SGL_RS01515 0.67 +3.3
30,287 - SGL_RS01515 0.69 +4.0
30,299 - SGL_RS01515 0.70 +3.1
30,341 + SGL_RS01515 0.71 +3.5
30,341 + SGL_RS01515 0.71 +2.8
30,341 + SGL_RS01515 0.71 +3.3
30,349 - SGL_RS01515 0.71 +2.3
30,349 - SGL_RS01515 0.71 +3.2
30,395 + SGL_RS01515 0.72 +2.2
30,402 - SGL_RS01515 0.73 +2.6
30,431 - SGL_RS01515 0.73 +3.1
30,460 - SGL_RS01515 0.74 +2.9
30,460 - SGL_RS01515 0.74 +3.4
30,511 - SGL_RS01515 0.76 +3.2
30,616 + SGL_RS01515 0.79 +0.0
30,654 + SGL_RS01515 0.80 +2.4
30,676 + SGL_RS01515 0.81 +3.0
30,766 - SGL_RS01515 0.83 +3.2
30,804 + SGL_RS01515 0.85 +0.6
30,804 + SGL_RS01515 0.85 +3.0
30,812 - SGL_RS01515 0.85 +3.1
30,817 - SGL_RS01515 0.85 +2.1
30,833 - SGL_RS01515 0.85 +3.6
30,855 + SGL_RS01515 0.86 +2.9
30,978 + SGL_RS01515 0.90 +3.4
30,991 - +3.1
31,016 + +3.0
31,029 - +3.2
31,111 + +2.7
31,172 + +3.5
31,347 + -0.5
31,347 + +0.9
31,381 - SGL_RS19730 0.25 -0.0
31,387 - SGL_RS19730 0.31 -0.1
31,389 - SGL_RS19730 0.32 +0.6
31,511 - SGL_RS19320 0.26 -0.6
31,545 + SGL_RS19320 0.35 +0.0
31,587 - SGL_RS19320 0.45 +0.3
31,587 - SGL_RS19320 0.45 +0.3
31,722 - SGL_RS19320 0.80 +0.9
32,079 - -1.0
32,089 + +0.9

Or see this region's nucleotide sequence