Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10020

Experiment: growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with air enriched with 5% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS10015 and SGL_RS10020 are separated by 26 nucleotidesSGL_RS10020 and SGL_RS18875 are separated by 252 nucleotidesSGL_RS18875 and SGL_RS19880 overlap by 91 nucleotides SGL_RS10015: SGL_RS10015 - calcium/proton exchanger, at 1,723,452 to 1,724,570 _RS10015 SGL_RS10020: SGL_RS10020 - dCTP deaminase, at 1,724,597 to 1,725,178 _RS10020 SGL_RS18875: SGL_RS18875 - IS630 family transposase, at 1,725,431 to 1,726,009 _RS18875 SGL_RS19880: SGL_RS19880 - IS630 transposase-related protein, at 1,725,919 to 1,726,278 _RS19880 Position (kb) 1724 1725 1726Strain fitness (log2 ratio) -1 0 1at 1723.612 kb on - strand, within SGL_RS10015at 1723.653 kb on + strand, within SGL_RS10015at 1723.726 kb on - strand, within SGL_RS10015at 1723.726 kb on - strand, within SGL_RS10015at 1723.741 kb on + strand, within SGL_RS10015at 1723.911 kb on - strand, within SGL_RS10015at 1723.956 kb on + strand, within SGL_RS10015at 1723.966 kb on + strand, within SGL_RS10015at 1724.002 kb on - strand, within SGL_RS10015at 1724.151 kb on - strand, within SGL_RS10015at 1724.157 kb on - strand, within SGL_RS10015at 1724.182 kb on + strand, within SGL_RS10015at 1724.207 kb on + strand, within SGL_RS10015at 1724.232 kb on + strand, within SGL_RS10015at 1724.238 kb on + strand, within SGL_RS10015at 1724.268 kb on - strand, within SGL_RS10015at 1724.270 kb on + strand, within SGL_RS10015at 1724.320 kb on - strand, within SGL_RS10015at 1724.320 kb on - strand, within SGL_RS10015at 1724.399 kb on + strand, within SGL_RS10015at 1724.414 kb on - strand, within SGL_RS10015at 1724.481 kb on - strandat 1724.502 kb on - strandat 1724.595 kb on + strandat 1725.257 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with air enriched with 5% CO2 but diluted to prevent light attenuation
remove
1,723,612 - SGL_RS10015 0.14 +0.2
1,723,653 + SGL_RS10015 0.18 +0.1
1,723,726 - SGL_RS10015 0.24 +0.7
1,723,726 - SGL_RS10015 0.24 +0.5
1,723,741 + SGL_RS10015 0.26 +0.6
1,723,911 - SGL_RS10015 0.41 +0.4
1,723,956 + SGL_RS10015 0.45 +0.4
1,723,966 + SGL_RS10015 0.46 -0.4
1,724,002 - SGL_RS10015 0.49 +0.1
1,724,151 - SGL_RS10015 0.62 +0.3
1,724,157 - SGL_RS10015 0.63 -0.0
1,724,182 + SGL_RS10015 0.65 +0.8
1,724,207 + SGL_RS10015 0.67 +0.6
1,724,232 + SGL_RS10015 0.70 +0.6
1,724,238 + SGL_RS10015 0.70 +0.3
1,724,268 - SGL_RS10015 0.73 +0.2
1,724,270 + SGL_RS10015 0.73 +0.4
1,724,320 - SGL_RS10015 0.78 -0.5
1,724,320 - SGL_RS10015 0.78 +0.5
1,724,399 + SGL_RS10015 0.85 +0.7
1,724,414 - SGL_RS10015 0.86 -0.1
1,724,481 - +0.5
1,724,502 - +0.2
1,724,595 + +0.4
1,725,257 + +0.3

Or see this region's nucleotide sequence