Experiment: growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with air enriched with 5% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02015 and SGL_RS02020 are separated by 141 nucleotides SGL_RS02020 and SGL_RS02025 are separated by 180 nucleotides
SGL_RS02015: SGL_RS02015 - ABC transporter ATP-binding protein, at 36,757 to 38,538
_RS02015
SGL_RS02020: SGL_RS02020 - AraC family transcriptional regulator, at 38,680 to 39,636
_RS02020
SGL_RS02025: SGL_RS02025 - TonB-dependent receptor, at 39,817 to 42,363
_RS02025
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.693 kb on + strand, within SGL_RS02015 at 37.704 kb on + strand, within SGL_RS02015 at 37.863 kb on - strand, within SGL_RS02015 at 37.891 kb on + strand, within SGL_RS02015 at 38.029 kb on - strand, within SGL_RS02015 at 38.144 kb on + strand, within SGL_RS02015 at 38.152 kb on - strand, within SGL_RS02015 at 38.235 kb on - strand, within SGL_RS02015 at 38.291 kb on + strand, within SGL_RS02015 at 38.391 kb on + strand at 38.399 kb on + strand at 38.462 kb on + strand at 38.467 kb on + strand at 38.528 kb on + strand at 38.528 kb on + strand at 38.818 kb on + strand, within SGL_RS02020 at 38.865 kb on + strand, within SGL_RS02020 at 38.911 kb on - strand, within SGL_RS02020 at 39.057 kb on - strand, within SGL_RS02020 at 39.180 kb on + strand, within SGL_RS02020 at 39.235 kb on + strand, within SGL_RS02020 at 39.235 kb on + strand, within SGL_RS02020 at 39.250 kb on - strand, within SGL_RS02020 at 39.859 kb on - strand at 39.891 kb on + strand at 39.912 kb on - strand at 39.939 kb on + strand at 39.946 kb on - strand at 39.981 kb on - strand at 40.015 kb on + strand at 40.058 kb on + strand at 40.164 kb on - strand, within SGL_RS02025 at 40.221 kb on - strand, within SGL_RS02025 at 40.351 kb on + strand, within SGL_RS02025 at 40.370 kb on + strand, within SGL_RS02025 at 40.409 kb on + strand, within SGL_RS02025 at 40.409 kb on - strand, within SGL_RS02025 at 40.415 kb on - strand, within SGL_RS02025 at 40.443 kb on + strand, within SGL_RS02025 at 40.497 kb on + strand, within SGL_RS02025 at 40.519 kb on - strand, within SGL_RS02025 at 40.545 kb on + strand, within SGL_RS02025 at 40.562 kb on + strand, within SGL_RS02025 at 40.630 kb on + strand, within SGL_RS02025 at 40.630 kb on + strand, within SGL_RS02025
Per-strain Table
Position Strand Gene LocusTag Fraction growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with air enriched with 5% CO2 but diluted to prevent light attenuation remove 37,693 + SGL_RS02015 0.53 +0.2 37,704 + SGL_RS02015 0.53 +0.2 37,863 - SGL_RS02015 0.62 -0.8 37,891 + SGL_RS02015 0.64 +0.2 38,029 - SGL_RS02015 0.71 -1.0 38,144 + SGL_RS02015 0.78 +0.1 38,152 - SGL_RS02015 0.78 -1.0 38,235 - SGL_RS02015 0.83 -0.6 38,291 + SGL_RS02015 0.86 +0.2 38,391 + +0.4 38,399 + -0.0 38,462 + +0.2 38,467 + +0.0 38,528 + -0.1 38,528 + -0.3 38,818 + SGL_RS02020 0.14 +0.0 38,865 + SGL_RS02020 0.19 -0.4 38,911 - SGL_RS02020 0.24 -0.8 39,057 - SGL_RS02020 0.39 -0.4 39,180 + SGL_RS02020 0.52 -0.4 39,235 + SGL_RS02020 0.58 +0.0 39,235 + SGL_RS02020 0.58 +0.9 39,250 - SGL_RS02020 0.60 -0.8 39,859 - -0.3 39,891 + +0.4 39,912 - -0.4 39,939 + -0.1 39,946 - -1.5 39,981 - -1.6 40,015 + -0.4 40,058 + -0.4 40,164 - SGL_RS02025 0.14 -0.8 40,221 - SGL_RS02025 0.16 -0.5 40,351 + SGL_RS02025 0.21 +0.0 40,370 + SGL_RS02025 0.22 -0.4 40,409 + SGL_RS02025 0.23 +0.0 40,409 - SGL_RS02025 0.23 +0.6 40,415 - SGL_RS02025 0.23 -0.0 40,443 + SGL_RS02025 0.25 -0.9 40,497 + SGL_RS02025 0.27 -0.4 40,519 - SGL_RS02025 0.28 +0.6 40,545 + SGL_RS02025 0.29 -1.2 40,562 + SGL_RS02025 0.29 -0.7 40,630 + SGL_RS02025 0.32 -0.1 40,630 + SGL_RS02025 0.32 -0.7
Or see this region's nucleotide sequence