Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16690

Experiment: growth in full media bubbled with air enriched in 1% CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16680 and SGL_RS16685 are separated by 101 nucleotidesSGL_RS16685 and SGL_RS16690 are separated by 235 nucleotidesSGL_RS16690 and SGL_RS16695 are separated by 9 nucleotides SGL_RS16680: SGL_RS16680 - DUF4922 domain-containing protein, at 3,199,930 to 3,200,838 _RS16680 SGL_RS16685: SGL_RS16685 - hypothetical protein, at 3,200,940 to 3,201,452 _RS16685 SGL_RS16690: SGL_RS16690 - adenosine kinase, at 3,201,688 to 3,202,689 _RS16690 SGL_RS16695: SGL_RS16695 - magnesium/cobalt transporter CorA, at 3,202,699 to 3,203,862 _RS16695 Position (kb) 3201 3202 3203Strain fitness (log2 ratio) -2 -1 0 1at 3200.780 kb on + strandat 3200.780 kb on + strandat 3200.836 kb on - strandat 3201.009 kb on - strand, within SGL_RS16685at 3201.020 kb on - strand, within SGL_RS16685at 3201.066 kb on - strand, within SGL_RS16685at 3201.241 kb on + strand, within SGL_RS16685at 3201.311 kb on + strand, within SGL_RS16685at 3201.689 kb on - strandat 3201.752 kb on + strandat 3201.849 kb on - strand, within SGL_RS16690at 3201.849 kb on - strand, within SGL_RS16690at 3201.886 kb on + strand, within SGL_RS16690at 3201.914 kb on - strand, within SGL_RS16690at 3202.436 kb on - strand, within SGL_RS16690at 3202.495 kb on + strand, within SGL_RS16690at 3202.553 kb on + strand, within SGL_RS16690at 3202.561 kb on - strand, within SGL_RS16690at 3202.633 kb on - strandat 3202.840 kb on + strand, within SGL_RS16695at 3203.402 kb on + strand, within SGL_RS16695at 3203.409 kb on + strand, within SGL_RS16695at 3203.584 kb on + strand, within SGL_RS16695at 3203.592 kb on - strand, within SGL_RS16695

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2
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3,200,780 + -0.5
3,200,780 + -0.1
3,200,836 - -0.0
3,201,009 - SGL_RS16685 0.13 +0.1
3,201,020 - SGL_RS16685 0.16 +0.2
3,201,066 - SGL_RS16685 0.25 -0.1
3,201,241 + SGL_RS16685 0.59 -0.1
3,201,311 + SGL_RS16685 0.72 -0.2
3,201,689 - -1.0
3,201,752 + -0.7
3,201,849 - SGL_RS16690 0.16 +0.2
3,201,849 - SGL_RS16690 0.16 -0.9
3,201,886 + SGL_RS16690 0.20 -2.1
3,201,914 - SGL_RS16690 0.23 -0.4
3,202,436 - SGL_RS16690 0.75 +0.1
3,202,495 + SGL_RS16690 0.81 -1.8
3,202,553 + SGL_RS16690 0.86 -2.1
3,202,561 - SGL_RS16690 0.87 -1.7
3,202,633 - -1.9
3,202,840 + SGL_RS16695 0.12 +0.2
3,203,402 + SGL_RS16695 0.60 +0.3
3,203,409 + SGL_RS16695 0.61 +0.1
3,203,584 + SGL_RS16695 0.76 +0.1
3,203,592 - SGL_RS16695 0.77 +0.1

Or see this region's nucleotide sequence