Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13560

Experiment: growth in full media bubbled with air enriched in 1% CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13555 and SGL_RS13560 are separated by 257 nucleotidesSGL_RS13560 and SGL_RS13565 are separated by 241 nucleotides SGL_RS13555: SGL_RS13555 - aldehyde oxygenase (deformylating), at 2,511,514 to 2,512,209 _RS13555 SGL_RS13560: SGL_RS13560 - glucose-1-phosphate thymidylyltransferase, at 2,512,467 to 2,513,564 _RS13560 SGL_RS13565: SGL_RS13565 - glycine--tRNA ligase subunit beta, at 2,513,806 to 2,515,974 _RS13565 Position (kb) 2512 2513 2514Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2511.652 kb on + strand, within SGL_RS13555at 2511.788 kb on + strand, within SGL_RS13555at 2512.136 kb on - strand, within SGL_RS13555at 2512.232 kb on - strandat 2512.377 kb on - strandat 2512.396 kb on - strandat 2512.404 kb on + strandat 2512.407 kb on - strandat 2512.457 kb on - strandat 2512.478 kb on - strandat 2512.494 kb on + strandat 2512.673 kb on - strand, within SGL_RS13560at 2512.687 kb on - strand, within SGL_RS13560at 2512.752 kb on + strand, within SGL_RS13560at 2512.761 kb on + strand, within SGL_RS13560at 2512.817 kb on + strand, within SGL_RS13560at 2512.950 kb on + strand, within SGL_RS13560at 2512.951 kb on - strand, within SGL_RS13560at 2513.008 kb on + strand, within SGL_RS13560at 2513.025 kb on + strand, within SGL_RS13560at 2513.108 kb on - strand, within SGL_RS13560at 2513.108 kb on - strand, within SGL_RS13560at 2513.403 kb on + strand, within SGL_RS13560at 2513.455 kb on - strandat 2513.493 kb on - strandat 2513.514 kb on - strandat 2513.602 kb on - strandat 2513.602 kb on - strandat 2513.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2
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2,511,652 + SGL_RS13555 0.20 -0.7
2,511,788 + SGL_RS13555 0.39 -0.1
2,512,136 - SGL_RS13555 0.89 -3.8
2,512,232 - -1.9
2,512,377 - -0.3
2,512,396 - -0.8
2,512,404 + +0.8
2,512,407 - -0.1
2,512,457 - +0.1
2,512,478 - -1.2
2,512,494 + -1.8
2,512,673 - SGL_RS13560 0.19 -1.8
2,512,687 - SGL_RS13560 0.20 -2.1
2,512,752 + SGL_RS13560 0.26 -1.8
2,512,761 + SGL_RS13560 0.27 -1.6
2,512,817 + SGL_RS13560 0.32 -1.0
2,512,950 + SGL_RS13560 0.44 -1.6
2,512,951 - SGL_RS13560 0.44 -1.5
2,513,008 + SGL_RS13560 0.49 -1.1
2,513,025 + SGL_RS13560 0.51 -1.5
2,513,108 - SGL_RS13560 0.58 -2.6
2,513,108 - SGL_RS13560 0.58 -1.7
2,513,403 + SGL_RS13560 0.85 -1.4
2,513,455 - -1.4
2,513,493 - -1.7
2,513,514 - +0.6
2,513,602 - +0.1
2,513,602 - -0.2
2,513,602 - -0.6

Or see this region's nucleotide sequence