Experiment: growth in full media bubbled with air enriched in 1% CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09715 and SGL_RS09720 are separated by 7 nucleotides SGL_RS09720 and SGL_RS09725 are separated by 206 nucleotides
SGL_RS09715: SGL_RS09715 - pitrilysin family protein, at 1,669,125 to 1,670,642
_RS09715
SGL_RS09720: SGL_RS09720 - beta-ketoacyl-ACP synthase, at 1,670,650 to 1,671,864
_RS09720
SGL_RS09725: SGL_RS09725 - Ni/Fe hydrogenase subunit alpha, at 1,672,071 to 1,673,495
_RS09725
Position (kb) 1670
1671
1672 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1669.783 kb on + strand, within SGL_RS09715 at 1669.808 kb on - strand, within SGL_RS09715 at 1669.875 kb on - strand, within SGL_RS09715 at 1669.889 kb on - strand, within SGL_RS09715 at 1669.956 kb on + strand, within SGL_RS09715 at 1670.079 kb on + strand, within SGL_RS09715 at 1670.097 kb on - strand, within SGL_RS09715 at 1670.098 kb on + strand, within SGL_RS09715 at 1670.189 kb on - strand, within SGL_RS09715 at 1670.211 kb on + strand, within SGL_RS09715 at 1670.211 kb on + strand, within SGL_RS09715 at 1670.211 kb on + strand, within SGL_RS09715 at 1670.211 kb on + strand, within SGL_RS09715 at 1670.219 kb on - strand, within SGL_RS09715 at 1670.219 kb on - strand, within SGL_RS09715 at 1670.305 kb on + strand, within SGL_RS09715 at 1670.342 kb on - strand, within SGL_RS09715 at 1670.586 kb on + strand at 1670.587 kb on + strand at 1670.688 kb on + strand at 1670.722 kb on + strand at 1670.725 kb on - strand at 1670.730 kb on - strand at 1670.884 kb on + strand, within SGL_RS09720 at 1670.956 kb on - strand, within SGL_RS09720 at 1671.004 kb on - strand, within SGL_RS09720 at 1671.084 kb on - strand, within SGL_RS09720 at 1671.134 kb on + strand, within SGL_RS09720 at 1671.142 kb on - strand, within SGL_RS09720 at 1671.170 kb on + strand, within SGL_RS09720 at 1671.310 kb on - strand, within SGL_RS09720 at 1671.530 kb on + strand, within SGL_RS09720 at 1671.626 kb on + strand, within SGL_RS09720 at 1671.626 kb on + strand, within SGL_RS09720 at 1671.634 kb on - strand, within SGL_RS09720 at 1671.634 kb on - strand, within SGL_RS09720 at 1671.800 kb on + strand at 1671.923 kb on + strand at 1672.017 kb on + strand at 1672.019 kb on - strand at 1672.087 kb on + strand at 1672.160 kb on + strand at 1672.390 kb on - strand, within SGL_RS09725 at 1672.655 kb on - strand, within SGL_RS09725
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 remove 1,669,783 + SGL_RS09715 0.43 -0.3 1,669,808 - SGL_RS09715 0.45 -0.1 1,669,875 - SGL_RS09715 0.49 -1.4 1,669,889 - SGL_RS09715 0.50 -0.6 1,669,956 + SGL_RS09715 0.55 +0.3 1,670,079 + SGL_RS09715 0.63 -0.3 1,670,097 - SGL_RS09715 0.64 -1.4 1,670,098 + SGL_RS09715 0.64 -1.9 1,670,189 - SGL_RS09715 0.70 -2.5 1,670,211 + SGL_RS09715 0.72 -1.1 1,670,211 + SGL_RS09715 0.72 -0.3 1,670,211 + SGL_RS09715 0.72 +0.4 1,670,211 + SGL_RS09715 0.72 -0.2 1,670,219 - SGL_RS09715 0.72 -0.7 1,670,219 - SGL_RS09715 0.72 -1.1 1,670,305 + SGL_RS09715 0.78 +0.5 1,670,342 - SGL_RS09715 0.80 -1.3 1,670,586 + +3.5 1,670,587 + -1.3 1,670,688 + -0.4 1,670,722 + -1.6 1,670,725 - +0.1 1,670,730 - -2.1 1,670,884 + SGL_RS09720 0.19 -2.1 1,670,956 - SGL_RS09720 0.25 -0.3 1,671,004 - SGL_RS09720 0.29 +1.7 1,671,084 - SGL_RS09720 0.36 -0.3 1,671,134 + SGL_RS09720 0.40 -1.6 1,671,142 - SGL_RS09720 0.40 -0.9 1,671,170 + SGL_RS09720 0.43 -1.6 1,671,310 - SGL_RS09720 0.54 -0.9 1,671,530 + SGL_RS09720 0.72 -0.3 1,671,626 + SGL_RS09720 0.80 -0.9 1,671,626 + SGL_RS09720 0.80 -0.6 1,671,634 - SGL_RS09720 0.81 -0.6 1,671,634 - SGL_RS09720 0.81 -1.9 1,671,800 + +0.7 1,671,923 + +0.4 1,672,017 + +0.0 1,672,019 - -0.7 1,672,087 + -1.4 1,672,160 + +0.0 1,672,390 - SGL_RS09725 0.22 -0.7 1,672,655 - SGL_RS09725 0.41 +0.4
Or see this region's nucleotide sequence