Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09660

Experiment: growth in full media bubbled with air enriched in 1% CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09650 and SGL_RS09655 are separated by 148 nucleotidesSGL_RS09655 and SGL_RS09660 are separated by 370 nucleotidesSGL_RS09660 and SGL_RS09665 are separated by 185 nucleotides SGL_RS09650: SGL_RS09650 - hypothetical protein, at 1,654,943 to 1,655,140 _RS09650 SGL_RS09655: SGL_RS09655 - heterocyst frequency control protein PatD, at 1,655,289 to 1,655,672 _RS09655 SGL_RS09660: SGL_RS09660 - RelA/SpoT family protein, at 1,656,043 to 1,658,325 _RS09660 SGL_RS09665: SGL_RS09665 - adenosylhomocysteinase, at 1,658,511 to 1,659,788 _RS09665 Position (kb) 1656 1657 1658 1659Strain fitness (log2 ratio) -3 -2 -1 0 1at 1655.063 kb on + strand, within SGL_RS09650at 1655.105 kb on + strand, within SGL_RS09650at 1655.165 kb on + strandat 1655.195 kb on - strandat 1655.205 kb on - strandat 1655.286 kb on + strandat 1655.294 kb on - strandat 1655.310 kb on + strandat 1655.320 kb on + strandat 1655.376 kb on - strand, within SGL_RS09655at 1655.412 kb on + strand, within SGL_RS09655at 1655.432 kb on + strand, within SGL_RS09655at 1655.506 kb on - strand, within SGL_RS09655at 1655.629 kb on + strand, within SGL_RS09655at 1655.701 kb on - strandat 1655.751 kb on + strandat 1655.764 kb on - strandat 1655.802 kb on + strandat 1655.929 kb on + strandat 1656.021 kb on + strandat 1656.097 kb on - strandat 1656.099 kb on - strandat 1657.197 kb on - strand, within SGL_RS09660at 1657.393 kb on + strand, within SGL_RS09660at 1657.412 kb on - strand, within SGL_RS09660at 1657.430 kb on + strand, within SGL_RS09660at 1657.430 kb on - strand, within SGL_RS09660at 1657.507 kb on + strand, within SGL_RS09660at 1657.523 kb on + strand, within SGL_RS09660at 1657.531 kb on + strand, within SGL_RS09660at 1657.629 kb on + strand, within SGL_RS09660at 1657.656 kb on - strand, within SGL_RS09660at 1657.666 kb on - strand, within SGL_RS09660at 1657.731 kb on - strand, within SGL_RS09660at 1657.764 kb on - strand, within SGL_RS09660at 1657.850 kb on + strand, within SGL_RS09660at 1657.971 kb on - strand, within SGL_RS09660at 1657.976 kb on - strand, within SGL_RS09660at 1658.009 kb on + strand, within SGL_RS09660at 1658.173 kb on - strandat 1658.254 kb on + strandat 1658.323 kb on - strandat 1658.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2
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1,655,063 + SGL_RS09650 0.61 -0.5
1,655,105 + SGL_RS09650 0.82 -0.2
1,655,165 + +0.1
1,655,195 - -0.0
1,655,205 - +0.2
1,655,286 + -0.1
1,655,294 - -0.4
1,655,310 + +0.0
1,655,320 + +0.3
1,655,376 - SGL_RS09655 0.23 -0.2
1,655,412 + SGL_RS09655 0.32 -0.1
1,655,432 + SGL_RS09655 0.37 -0.1
1,655,506 - SGL_RS09655 0.57 -0.3
1,655,629 + SGL_RS09655 0.89 +0.5
1,655,701 - +0.3
1,655,751 + +0.1
1,655,764 - -0.3
1,655,802 + -0.2
1,655,929 + -0.9
1,656,021 + -1.5
1,656,097 - -0.9
1,656,099 - -0.9
1,657,197 - SGL_RS09660 0.51 -1.3
1,657,393 + SGL_RS09660 0.59 -0.9
1,657,412 - SGL_RS09660 0.60 -1.6
1,657,430 + SGL_RS09660 0.61 -1.3
1,657,430 - SGL_RS09660 0.61 -0.4
1,657,507 + SGL_RS09660 0.64 -0.6
1,657,523 + SGL_RS09660 0.65 -1.6
1,657,531 + SGL_RS09660 0.65 -0.5
1,657,629 + SGL_RS09660 0.69 -1.3
1,657,656 - SGL_RS09660 0.71 -0.8
1,657,666 - SGL_RS09660 0.71 -0.6
1,657,731 - SGL_RS09660 0.74 -0.9
1,657,764 - SGL_RS09660 0.75 -1.8
1,657,850 + SGL_RS09660 0.79 -1.9
1,657,971 - SGL_RS09660 0.84 -0.6
1,657,976 - SGL_RS09660 0.85 -1.9
1,658,009 + SGL_RS09660 0.86 -2.9
1,658,173 - -3.3
1,658,254 + -0.6
1,658,323 - -0.4
1,658,423 + -0.3

Or see this region's nucleotide sequence