Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08870

Experiment: growth in full media bubbled with air enriched in 1% CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08865 and SGL_RS08870 are separated by 56 nucleotidesSGL_RS08870 and SGL_RS08875 are separated by 79 nucleotidesSGL_RS08875 and SGL_RS08880 are separated by 189 nucleotides SGL_RS08865: SGL_RS08865 - potassium-transporting ATPase subunit KdpA, at 1,493,025 to 1,494,701 _RS08865 SGL_RS08870: SGL_RS08870 - potassium-transporting ATPase subunit KdpB, at 1,494,758 to 1,496,830 _RS08870 SGL_RS08875: SGL_RS08875 - potassium-transporting ATPase subunit F, at 1,496,910 to 1,497,116 _RS08875 SGL_RS08880: SGL_RS08880 - K(+)-transporting ATPase subunit C, at 1,497,306 to 1,497,878 _RS08880 Position (kb) 1494 1495 1496 1497Strain fitness (log2 ratio) -2 -1 0 1at 1493.852 kb on + strand, within SGL_RS08865at 1493.943 kb on + strand, within SGL_RS08865at 1493.951 kb on - strand, within SGL_RS08865at 1493.987 kb on + strand, within SGL_RS08865at 1494.023 kb on + strand, within SGL_RS08865at 1494.023 kb on + strand, within SGL_RS08865at 1494.029 kb on - strand, within SGL_RS08865at 1494.038 kb on - strand, within SGL_RS08865at 1494.063 kb on - strand, within SGL_RS08865at 1494.144 kb on + strand, within SGL_RS08865at 1494.152 kb on - strand, within SGL_RS08865at 1494.162 kb on + strand, within SGL_RS08865at 1494.312 kb on - strand, within SGL_RS08865at 1494.333 kb on - strand, within SGL_RS08865at 1494.446 kb on + strand, within SGL_RS08865at 1494.447 kb on - strand, within SGL_RS08865at 1494.602 kb on - strandat 1494.639 kb on + strandat 1494.916 kb on + strandat 1494.943 kb on + strandat 1495.074 kb on + strand, within SGL_RS08870at 1495.074 kb on - strand, within SGL_RS08870at 1495.074 kb on - strand, within SGL_RS08870at 1495.078 kb on + strand, within SGL_RS08870at 1495.078 kb on + strand, within SGL_RS08870at 1495.078 kb on + strand, within SGL_RS08870at 1495.084 kb on + strand, within SGL_RS08870at 1495.122 kb on - strand, within SGL_RS08870at 1495.161 kb on + strand, within SGL_RS08870at 1495.169 kb on - strand, within SGL_RS08870at 1495.181 kb on + strand, within SGL_RS08870at 1495.209 kb on + strand, within SGL_RS08870at 1495.240 kb on - strand, within SGL_RS08870at 1495.315 kb on + strand, within SGL_RS08870at 1495.320 kb on + strand, within SGL_RS08870at 1495.377 kb on - strand, within SGL_RS08870at 1495.425 kb on + strand, within SGL_RS08870at 1495.484 kb on + strand, within SGL_RS08870at 1495.551 kb on + strand, within SGL_RS08870at 1495.659 kb on - strand, within SGL_RS08870at 1495.671 kb on - strand, within SGL_RS08870at 1495.676 kb on - strand, within SGL_RS08870at 1495.707 kb on - strand, within SGL_RS08870at 1495.761 kb on + strand, within SGL_RS08870at 1495.810 kb on - strand, within SGL_RS08870at 1495.937 kb on + strand, within SGL_RS08870at 1495.952 kb on + strand, within SGL_RS08870at 1495.960 kb on - strand, within SGL_RS08870at 1495.991 kb on - strand, within SGL_RS08870at 1496.126 kb on - strand, within SGL_RS08870at 1496.206 kb on - strand, within SGL_RS08870at 1496.211 kb on - strand, within SGL_RS08870at 1496.330 kb on - strand, within SGL_RS08870at 1496.380 kb on + strand, within SGL_RS08870at 1496.459 kb on - strand, within SGL_RS08870at 1496.460 kb on + strand, within SGL_RS08870at 1496.526 kb on + strand, within SGL_RS08870at 1496.544 kb on - strand, within SGL_RS08870at 1496.635 kb on - strandat 1496.653 kb on + strandat 1496.671 kb on - strandat 1496.841 kb on + strandat 1496.942 kb on - strand, within SGL_RS08875at 1497.028 kb on - strand, within SGL_RS08875at 1497.038 kb on - strand, within SGL_RS08875at 1497.188 kb on + strandat 1497.332 kb on + strandat 1497.345 kb on - strandat 1497.428 kb on - strand, within SGL_RS08880at 1497.439 kb on - strand, within SGL_RS08880at 1497.439 kb on - strand, within SGL_RS08880at 1497.464 kb on - strand, within SGL_RS08880at 1497.590 kb on + strand, within SGL_RS08880at 1497.611 kb on - strand, within SGL_RS08880at 1497.635 kb on - strand, within SGL_RS08880at 1497.649 kb on - strand, within SGL_RS08880at 1497.698 kb on - strand, within SGL_RS08880at 1497.773 kb on - strand, within SGL_RS08880

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2
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1,493,852 + SGL_RS08865 0.49 -1.0
1,493,943 + SGL_RS08865 0.55 -0.7
1,493,951 - SGL_RS08865 0.55 -1.1
1,493,987 + SGL_RS08865 0.57 -1.3
1,494,023 + SGL_RS08865 0.60 -1.0
1,494,023 + SGL_RS08865 0.60 -1.2
1,494,029 - SGL_RS08865 0.60 -0.9
1,494,038 - SGL_RS08865 0.60 -1.5
1,494,063 - SGL_RS08865 0.62 -2.7
1,494,144 + SGL_RS08865 0.67 -1.6
1,494,152 - SGL_RS08865 0.67 -0.8
1,494,162 + SGL_RS08865 0.68 -1.0
1,494,312 - SGL_RS08865 0.77 -1.0
1,494,333 - SGL_RS08865 0.78 -0.9
1,494,446 + SGL_RS08865 0.85 -1.5
1,494,447 - SGL_RS08865 0.85 -2.0
1,494,602 - -1.2
1,494,639 + -1.4
1,494,916 + -1.2
1,494,943 + -1.0
1,495,074 + SGL_RS08870 0.15 -1.1
1,495,074 - SGL_RS08870 0.15 -1.2
1,495,074 - SGL_RS08870 0.15 -0.7
1,495,078 + SGL_RS08870 0.15 -1.8
1,495,078 + SGL_RS08870 0.15 -1.7
1,495,078 + SGL_RS08870 0.15 -1.9
1,495,084 + SGL_RS08870 0.16 -1.1
1,495,122 - SGL_RS08870 0.18 -0.1
1,495,161 + SGL_RS08870 0.19 -1.0
1,495,169 - SGL_RS08870 0.20 -0.8
1,495,181 + SGL_RS08870 0.20 -0.1
1,495,209 + SGL_RS08870 0.22 -0.7
1,495,240 - SGL_RS08870 0.23 -1.8
1,495,315 + SGL_RS08870 0.27 -1.3
1,495,320 + SGL_RS08870 0.27 -1.6
1,495,377 - SGL_RS08870 0.30 -0.6
1,495,425 + SGL_RS08870 0.32 -0.8
1,495,484 + SGL_RS08870 0.35 -0.7
1,495,551 + SGL_RS08870 0.38 -0.9
1,495,659 - SGL_RS08870 0.43 -1.7
1,495,671 - SGL_RS08870 0.44 -1.1
1,495,676 - SGL_RS08870 0.44 -0.7
1,495,707 - SGL_RS08870 0.46 -1.5
1,495,761 + SGL_RS08870 0.48 -0.7
1,495,810 - SGL_RS08870 0.51 -1.2
1,495,937 + SGL_RS08870 0.57 -0.9
1,495,952 + SGL_RS08870 0.58 -1.4
1,495,960 - SGL_RS08870 0.58 +0.1
1,495,991 - SGL_RS08870 0.59 -0.7
1,496,126 - SGL_RS08870 0.66 -1.5
1,496,206 - SGL_RS08870 0.70 -1.3
1,496,211 - SGL_RS08870 0.70 -1.1
1,496,330 - SGL_RS08870 0.76 -1.1
1,496,380 + SGL_RS08870 0.78 -1.2
1,496,459 - SGL_RS08870 0.82 -0.9
1,496,460 + SGL_RS08870 0.82 -1.3
1,496,526 + SGL_RS08870 0.85 -1.5
1,496,544 - SGL_RS08870 0.86 -0.8
1,496,635 - -0.7
1,496,653 + -2.3
1,496,671 - -0.7
1,496,841 + -0.4
1,496,942 - SGL_RS08875 0.15 -0.7
1,497,028 - SGL_RS08875 0.57 -1.1
1,497,038 - SGL_RS08875 0.62 -1.2
1,497,188 + -1.2
1,497,332 + -0.1
1,497,345 - -0.7
1,497,428 - SGL_RS08880 0.21 -0.9
1,497,439 - SGL_RS08880 0.23 -1.1
1,497,439 - SGL_RS08880 0.23 -1.3
1,497,464 - SGL_RS08880 0.28 -1.1
1,497,590 + SGL_RS08880 0.50 -0.3
1,497,611 - SGL_RS08880 0.53 -1.2
1,497,635 - SGL_RS08880 0.57 -0.1
1,497,649 - SGL_RS08880 0.60 -1.0
1,497,698 - SGL_RS08880 0.68 -1.1
1,497,773 - SGL_RS08880 0.82 -1.0

Or see this region's nucleotide sequence