Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08865

Experiment: growth in full media bubbled with air enriched in 1% CO2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08860 and SGL_RS08865 are separated by 299 nucleotidesSGL_RS08865 and SGL_RS08870 are separated by 56 nucleotides SGL_RS08860: SGL_RS08860 - HAMP domain-containing sensor histidine kinase, at 1,491,634 to 1,492,725 _RS08860 SGL_RS08865: SGL_RS08865 - potassium-transporting ATPase subunit KdpA, at 1,493,025 to 1,494,701 _RS08865 SGL_RS08870: SGL_RS08870 - potassium-transporting ATPase subunit KdpB, at 1,494,758 to 1,496,830 _RS08870 Position (kb) 1493 1494 1495Strain fitness (log2 ratio) -2 -1 0 1at 1492.115 kb on - strand, within SGL_RS08860at 1492.115 kb on - strand, within SGL_RS08860at 1492.117 kb on - strand, within SGL_RS08860at 1492.121 kb on + strand, within SGL_RS08860at 1492.166 kb on - strand, within SGL_RS08860at 1492.209 kb on + strand, within SGL_RS08860at 1492.223 kb on + strand, within SGL_RS08860at 1492.223 kb on + strand, within SGL_RS08860at 1492.223 kb on + strand, within SGL_RS08860at 1492.228 kb on + strand, within SGL_RS08860at 1492.231 kb on - strand, within SGL_RS08860at 1492.255 kb on - strand, within SGL_RS08860at 1492.294 kb on + strand, within SGL_RS08860at 1492.302 kb on - strand, within SGL_RS08860at 1492.392 kb on + strand, within SGL_RS08860at 1492.509 kb on - strand, within SGL_RS08860at 1492.510 kb on - strand, within SGL_RS08860at 1493.237 kb on - strand, within SGL_RS08865at 1493.310 kb on + strand, within SGL_RS08865at 1493.418 kb on - strand, within SGL_RS08865at 1493.423 kb on - strand, within SGL_RS08865at 1493.435 kb on - strand, within SGL_RS08865at 1493.449 kb on + strand, within SGL_RS08865at 1493.490 kb on - strand, within SGL_RS08865at 1493.591 kb on - strand, within SGL_RS08865at 1493.622 kb on - strand, within SGL_RS08865at 1493.743 kb on + strand, within SGL_RS08865at 1493.743 kb on - strand, within SGL_RS08865at 1493.852 kb on + strand, within SGL_RS08865at 1493.943 kb on + strand, within SGL_RS08865at 1493.951 kb on - strand, within SGL_RS08865at 1493.987 kb on + strand, within SGL_RS08865at 1494.023 kb on + strand, within SGL_RS08865at 1494.023 kb on + strand, within SGL_RS08865at 1494.029 kb on - strand, within SGL_RS08865at 1494.038 kb on - strand, within SGL_RS08865at 1494.063 kb on - strand, within SGL_RS08865at 1494.144 kb on + strand, within SGL_RS08865at 1494.152 kb on - strand, within SGL_RS08865at 1494.162 kb on + strand, within SGL_RS08865at 1494.312 kb on - strand, within SGL_RS08865at 1494.333 kb on - strand, within SGL_RS08865at 1494.446 kb on + strand, within SGL_RS08865at 1494.447 kb on - strand, within SGL_RS08865at 1494.602 kb on - strandat 1494.639 kb on + strandat 1494.916 kb on + strandat 1494.943 kb on + strandat 1495.074 kb on + strand, within SGL_RS08870at 1495.074 kb on - strand, within SGL_RS08870at 1495.074 kb on - strand, within SGL_RS08870at 1495.078 kb on + strand, within SGL_RS08870at 1495.078 kb on + strand, within SGL_RS08870at 1495.078 kb on + strand, within SGL_RS08870at 1495.084 kb on + strand, within SGL_RS08870at 1495.122 kb on - strand, within SGL_RS08870at 1495.161 kb on + strand, within SGL_RS08870at 1495.169 kb on - strand, within SGL_RS08870at 1495.181 kb on + strand, within SGL_RS08870at 1495.209 kb on + strand, within SGL_RS08870at 1495.240 kb on - strand, within SGL_RS08870at 1495.315 kb on + strand, within SGL_RS08870at 1495.320 kb on + strand, within SGL_RS08870at 1495.377 kb on - strand, within SGL_RS08870at 1495.425 kb on + strand, within SGL_RS08870at 1495.484 kb on + strand, within SGL_RS08870at 1495.551 kb on + strand, within SGL_RS08870at 1495.659 kb on - strand, within SGL_RS08870at 1495.671 kb on - strand, within SGL_RS08870at 1495.676 kb on - strand, within SGL_RS08870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2
remove
1,492,115 - SGL_RS08860 0.44 -0.9
1,492,115 - SGL_RS08860 0.44 -1.1
1,492,117 - SGL_RS08860 0.44 -1.1
1,492,121 + SGL_RS08860 0.45 -1.0
1,492,166 - SGL_RS08860 0.49 -0.8
1,492,209 + SGL_RS08860 0.53 -2.5
1,492,223 + SGL_RS08860 0.54 -0.9
1,492,223 + SGL_RS08860 0.54 -1.0
1,492,223 + SGL_RS08860 0.54 -0.4
1,492,228 + SGL_RS08860 0.54 -0.7
1,492,231 - SGL_RS08860 0.55 -0.0
1,492,255 - SGL_RS08860 0.57 -0.5
1,492,294 + SGL_RS08860 0.60 -1.2
1,492,302 - SGL_RS08860 0.61 -0.6
1,492,392 + SGL_RS08860 0.69 -0.2
1,492,509 - SGL_RS08860 0.80 -1.3
1,492,510 - SGL_RS08860 0.80 -1.2
1,493,237 - SGL_RS08865 0.13 -1.7
1,493,310 + SGL_RS08865 0.17 -1.7
1,493,418 - SGL_RS08865 0.23 -1.1
1,493,423 - SGL_RS08865 0.24 -1.1
1,493,435 - SGL_RS08865 0.24 -0.7
1,493,449 + SGL_RS08865 0.25 -0.9
1,493,490 - SGL_RS08865 0.28 -2.4
1,493,591 - SGL_RS08865 0.34 -1.7
1,493,622 - SGL_RS08865 0.36 -0.6
1,493,743 + SGL_RS08865 0.43 -0.9
1,493,743 - SGL_RS08865 0.43 -1.0
1,493,852 + SGL_RS08865 0.49 -1.0
1,493,943 + SGL_RS08865 0.55 -0.7
1,493,951 - SGL_RS08865 0.55 -1.1
1,493,987 + SGL_RS08865 0.57 -1.3
1,494,023 + SGL_RS08865 0.60 -1.0
1,494,023 + SGL_RS08865 0.60 -1.2
1,494,029 - SGL_RS08865 0.60 -0.9
1,494,038 - SGL_RS08865 0.60 -1.5
1,494,063 - SGL_RS08865 0.62 -2.7
1,494,144 + SGL_RS08865 0.67 -1.6
1,494,152 - SGL_RS08865 0.67 -0.8
1,494,162 + SGL_RS08865 0.68 -1.0
1,494,312 - SGL_RS08865 0.77 -1.0
1,494,333 - SGL_RS08865 0.78 -0.9
1,494,446 + SGL_RS08865 0.85 -1.5
1,494,447 - SGL_RS08865 0.85 -2.0
1,494,602 - -1.2
1,494,639 + -1.4
1,494,916 + -1.2
1,494,943 + -1.0
1,495,074 + SGL_RS08870 0.15 -1.1
1,495,074 - SGL_RS08870 0.15 -1.2
1,495,074 - SGL_RS08870 0.15 -0.7
1,495,078 + SGL_RS08870 0.15 -1.8
1,495,078 + SGL_RS08870 0.15 -1.7
1,495,078 + SGL_RS08870 0.15 -1.9
1,495,084 + SGL_RS08870 0.16 -1.1
1,495,122 - SGL_RS08870 0.18 -0.1
1,495,161 + SGL_RS08870 0.19 -1.0
1,495,169 - SGL_RS08870 0.20 -0.8
1,495,181 + SGL_RS08870 0.20 -0.1
1,495,209 + SGL_RS08870 0.22 -0.7
1,495,240 - SGL_RS08870 0.23 -1.8
1,495,315 + SGL_RS08870 0.27 -1.3
1,495,320 + SGL_RS08870 0.27 -1.6
1,495,377 - SGL_RS08870 0.30 -0.6
1,495,425 + SGL_RS08870 0.32 -0.8
1,495,484 + SGL_RS08870 0.35 -0.7
1,495,551 + SGL_RS08870 0.38 -0.9
1,495,659 - SGL_RS08870 0.43 -1.7
1,495,671 - SGL_RS08870 0.44 -1.1
1,495,676 - SGL_RS08870 0.44 -0.7

Or see this region's nucleotide sequence