Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06590

Experiment: growth in full media bubbled with air enriched in 1% CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06585 and SGL_RS06590 are separated by 74 nucleotidesSGL_RS06590 and SGL_RS06595 are separated by 85 nucleotides SGL_RS06585: SGL_RS06585 - nitrate ABC transporter ATP-binding protein, at 1,006,234 to 1,008,246 _RS06585 SGL_RS06590: SGL_RS06590 - nitrate ABC transporter permease, at 1,008,321 to 1,009,148 _RS06590 SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574 _RS06595 Position (kb) 1008 1009 1010Strain fitness (log2 ratio) -3 -2 -1 0 1at 1007.660 kb on - strand, within SGL_RS06585at 1007.864 kb on + strand, within SGL_RS06585at 1007.869 kb on + strand, within SGL_RS06585at 1008.187 kb on - strandat 1008.438 kb on + strand, within SGL_RS06590at 1008.438 kb on + strand, within SGL_RS06590at 1008.647 kb on - strand, within SGL_RS06590at 1008.724 kb on - strand, within SGL_RS06590at 1008.756 kb on + strand, within SGL_RS06590at 1008.842 kb on + strand, within SGL_RS06590at 1008.866 kb on + strand, within SGL_RS06590at 1008.886 kb on - strand, within SGL_RS06590at 1008.991 kb on + strand, within SGL_RS06590at 1008.999 kb on - strand, within SGL_RS06590at 1009.002 kb on + strand, within SGL_RS06590at 1009.200 kb on - strandat 1009.272 kb on - strandat 1009.272 kb on - strandat 1009.395 kb on - strand, within SGL_RS06595at 1009.395 kb on - strand, within SGL_RS06595at 1009.724 kb on + strand, within SGL_RS06595at 1009.852 kb on - strand, within SGL_RS06595at 1010.014 kb on - strand, within SGL_RS06595at 1010.060 kb on - strand, within SGL_RS06595

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2
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1,007,660 - SGL_RS06585 0.71 -1.4
1,007,864 + SGL_RS06585 0.81 -1.3
1,007,869 + SGL_RS06585 0.81 +0.7
1,008,187 - -3.7
1,008,438 + SGL_RS06590 0.14 -1.3
1,008,438 + SGL_RS06590 0.14 -0.9
1,008,647 - SGL_RS06590 0.39 -2.5
1,008,724 - SGL_RS06590 0.49 -1.3
1,008,756 + SGL_RS06590 0.53 -2.5
1,008,842 + SGL_RS06590 0.63 +0.1
1,008,866 + SGL_RS06590 0.66 -0.9
1,008,886 - SGL_RS06590 0.68 -0.3
1,008,991 + SGL_RS06590 0.81 -2.1
1,008,999 - SGL_RS06590 0.82 -1.9
1,009,002 + SGL_RS06590 0.82 -0.7
1,009,200 - -0.6
1,009,272 - -1.1
1,009,272 - -2.3
1,009,395 - SGL_RS06595 0.12 -2.9
1,009,395 - SGL_RS06595 0.12 -2.2
1,009,724 + SGL_RS06595 0.37 -2.1
1,009,852 - SGL_RS06595 0.46 -1.7
1,010,014 - SGL_RS06595 0.58 +0.7
1,010,060 - SGL_RS06595 0.62 -1.9

Or see this region's nucleotide sequence