Experiment: growth in full media bubbled with air enriched in 1% CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03685 and SGL_RS03690 are separated by 1 nucleotides SGL_RS03690 and SGL_RS03695 are separated by 69 nucleotides SGL_RS03695 and SGL_RS03700 overlap by 4 nucleotides SGL_RS03700 and SGL_RS03705 are separated by 75 nucleotides SGL_RS03705 and SGL_RS18675 are separated by 33 nucleotides
SGL_RS03685: SGL_RS03685 - glycosyltransferase, at 380,030 to 381,175
_RS03685
SGL_RS03690: SGL_RS03690 - glycosyltransferase, at 381,177 to 382,337
_RS03690
SGL_RS03695: SGL_RS03695 - type II toxin-antitoxin system HicB family antitoxin, at 382,407 to 382,646
_RS03695
SGL_RS03700: SGL_RS03700 - type II toxin-antitoxin system HicA family toxin, at 382,643 to 382,873
_RS03700
SGL_RS03705: SGL_RS03705 - UDP-glucose 4-epimerase, at 382,949 to 383,266
_RS03705
SGL_RS18675: SGL_RS18675 - hypothetical protein, at 383,300 to 383,794
_RS18675
Position (kb) 381
382
383 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 380.344 kb on - strand, within SGL_RS03685 at 380.375 kb on - strand, within SGL_RS03685 at 380.389 kb on + strand, within SGL_RS03685 at 380.402 kb on - strand, within SGL_RS03685 at 380.486 kb on - strand, within SGL_RS03685 at 380.674 kb on - strand, within SGL_RS03685 at 380.729 kb on - strand, within SGL_RS03685 at 380.869 kb on - strand, within SGL_RS03685 at 380.920 kb on - strand, within SGL_RS03685 at 380.920 kb on - strand, within SGL_RS03685 at 380.971 kb on + strand, within SGL_RS03685 at 380.971 kb on + strand, within SGL_RS03685 at 380.998 kb on - strand, within SGL_RS03685 at 381.016 kb on - strand, within SGL_RS03685 at 381.301 kb on + strand, within SGL_RS03690 at 381.308 kb on + strand, within SGL_RS03690 at 381.309 kb on - strand, within SGL_RS03690 at 381.346 kb on - strand, within SGL_RS03690 at 381.423 kb on + strand, within SGL_RS03690 at 381.445 kb on + strand, within SGL_RS03690 at 381.453 kb on - strand, within SGL_RS03690 at 381.457 kb on + strand, within SGL_RS03690 at 381.458 kb on - strand, within SGL_RS03690 at 381.465 kb on - strand, within SGL_RS03690 at 381.465 kb on - strand, within SGL_RS03690 at 381.465 kb on - strand, within SGL_RS03690 at 381.465 kb on - strand, within SGL_RS03690 at 381.507 kb on + strand, within SGL_RS03690 at 381.539 kb on + strand, within SGL_RS03690 at 381.578 kb on - strand, within SGL_RS03690 at 381.591 kb on + strand, within SGL_RS03690 at 381.592 kb on + strand, within SGL_RS03690 at 381.592 kb on + strand, within SGL_RS03690 at 381.600 kb on - strand, within SGL_RS03690 at 381.661 kb on - strand, within SGL_RS03690 at 381.668 kb on - strand, within SGL_RS03690 at 381.777 kb on + strand, within SGL_RS03690 at 381.785 kb on - strand, within SGL_RS03690 at 381.867 kb on - strand, within SGL_RS03690 at 381.934 kb on - strand, within SGL_RS03690 at 381.953 kb on + strand, within SGL_RS03690 at 381.953 kb on + strand, within SGL_RS03690 at 381.994 kb on - strand, within SGL_RS03690 at 382.002 kb on + strand, within SGL_RS03690 at 382.089 kb on + strand, within SGL_RS03690 at 382.135 kb on + strand, within SGL_RS03690 at 382.140 kb on - strand, within SGL_RS03690 at 382.143 kb on - strand, within SGL_RS03690 at 382.210 kb on + strand, within SGL_RS03690 at 382.223 kb on + strand at 382.281 kb on - strand at 382.281 kb on - strand at 382.780 kb on - strand, within SGL_RS03700 at 382.921 kb on + strand at 382.960 kb on - strand at 382.960 kb on - strand at 382.960 kb on - strand at 382.983 kb on - strand, within SGL_RS03705 at 382.988 kb on - strand, within SGL_RS03705 at 383.217 kb on - strand, within SGL_RS03705 at 383.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 remove 380,344 - SGL_RS03685 0.27 -0.5 380,375 - SGL_RS03685 0.30 -1.8 380,389 + SGL_RS03685 0.31 -1.3 380,402 - SGL_RS03685 0.32 -1.1 380,486 - SGL_RS03685 0.40 -1.5 380,674 - SGL_RS03685 0.56 -1.5 380,729 - SGL_RS03685 0.61 -1.3 380,869 - SGL_RS03685 0.73 -1.4 380,920 - SGL_RS03685 0.78 -1.2 380,920 - SGL_RS03685 0.78 -1.5 380,971 + SGL_RS03685 0.82 -1.1 380,971 + SGL_RS03685 0.82 -2.0 380,998 - SGL_RS03685 0.84 -0.9 381,016 - SGL_RS03685 0.86 -1.8 381,301 + SGL_RS03690 0.11 -0.3 381,308 + SGL_RS03690 0.11 -1.2 381,309 - SGL_RS03690 0.11 -1.0 381,346 - SGL_RS03690 0.15 -0.1 381,423 + SGL_RS03690 0.21 -2.0 381,445 + SGL_RS03690 0.23 -1.1 381,453 - SGL_RS03690 0.24 -1.5 381,457 + SGL_RS03690 0.24 -0.8 381,458 - SGL_RS03690 0.24 -1.0 381,465 - SGL_RS03690 0.25 -2.3 381,465 - SGL_RS03690 0.25 -2.1 381,465 - SGL_RS03690 0.25 -1.1 381,465 - SGL_RS03690 0.25 -2.4 381,507 + SGL_RS03690 0.28 -1.6 381,539 + SGL_RS03690 0.31 -1.2 381,578 - SGL_RS03690 0.35 -1.6 381,591 + SGL_RS03690 0.36 -0.7 381,592 + SGL_RS03690 0.36 -0.4 381,592 + SGL_RS03690 0.36 -1.2 381,600 - SGL_RS03690 0.36 +1.8 381,661 - SGL_RS03690 0.42 -3.4 381,668 - SGL_RS03690 0.42 -1.1 381,777 + SGL_RS03690 0.52 -0.7 381,785 - SGL_RS03690 0.52 -2.0 381,867 - SGL_RS03690 0.59 -0.7 381,934 - SGL_RS03690 0.65 -1.5 381,953 + SGL_RS03690 0.67 -1.1 381,953 + SGL_RS03690 0.67 -0.8 381,994 - SGL_RS03690 0.70 -1.0 382,002 + SGL_RS03690 0.71 -1.5 382,089 + SGL_RS03690 0.79 -1.2 382,135 + SGL_RS03690 0.83 -0.5 382,140 - SGL_RS03690 0.83 -1.6 382,143 - SGL_RS03690 0.83 -1.0 382,210 + SGL_RS03690 0.89 -1.8 382,223 + -2.3 382,281 - -1.6 382,281 - -1.4 382,780 - SGL_RS03700 0.59 +0.1 382,921 + +0.4 382,960 - -0.4 382,960 - +0.2 382,960 - -1.2 382,983 - SGL_RS03705 0.11 -0.3 382,988 - SGL_RS03705 0.12 -0.4 383,217 - SGL_RS03705 0.84 +0.2 383,318 + -0.5
Or see this region's nucleotide sequence