Experiment: growth in full media bubbled with air enriched in 1% CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03450 and SGL_RS03455 are separated by 100 nucleotides SGL_RS03455 and SGL_RS03460 are separated by 171 nucleotides SGL_RS03460 and SGL_RS03465 are separated by 76 nucleotides SGL_RS03465 and SGL_RS03470 are separated by 111 nucleotides
SGL_RS03450: SGL_RS03450 - permease, at 336,747 to 337,760
_RS03450
SGL_RS03455: SGL_RS03455 - tetratricopeptide repeat protein, at 337,861 to 338,331
_RS03455
SGL_RS03460: SGL_RS03460 - hypothetical protein, at 338,503 to 339,063
_RS03460
SGL_RS03465: SGL_RS03465 - allophycocyanin subunit alpha-B, at 339,140 to 339,625
_RS03465
SGL_RS03470: SGL_RS03470 - methionine adenosyltransferase, at 339,737 to 340,999
_RS03470
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1 at 337.931 kb on + strand, within SGL_RS03455 at 337.933 kb on + strand, within SGL_RS03455 at 338.162 kb on - strand, within SGL_RS03455 at 338.162 kb on - strand, within SGL_RS03455 at 338.162 kb on - strand, within SGL_RS03455 at 338.225 kb on + strand, within SGL_RS03455 at 338.225 kb on + strand, within SGL_RS03455 at 338.239 kb on - strand, within SGL_RS03455 at 338.428 kb on + strand at 338.618 kb on - strand, within SGL_RS03460 at 338.679 kb on + strand, within SGL_RS03460 at 338.724 kb on + strand, within SGL_RS03460 at 338.777 kb on - strand, within SGL_RS03460 at 338.906 kb on - strand, within SGL_RS03460 at 338.929 kb on + strand, within SGL_RS03460 at 339.198 kb on + strand, within SGL_RS03465 at 339.273 kb on + strand, within SGL_RS03465 at 339.283 kb on - strand, within SGL_RS03465 at 339.318 kb on + strand, within SGL_RS03465 at 339.410 kb on + strand, within SGL_RS03465 at 339.439 kb on - strand, within SGL_RS03465 at 339.444 kb on + strand, within SGL_RS03465 at 339.444 kb on + strand, within SGL_RS03465 at 339.621 kb on + strand at 339.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 remove 337,931 + SGL_RS03455 0.15 +0.3 337,933 + SGL_RS03455 0.15 +0.7 338,162 - SGL_RS03455 0.64 +0.1 338,162 - SGL_RS03455 0.64 -0.5 338,162 - SGL_RS03455 0.64 +0.0 338,225 + SGL_RS03455 0.77 -0.2 338,225 + SGL_RS03455 0.77 -0.3 338,239 - SGL_RS03455 0.80 -0.2 338,428 + +0.1 338,618 - SGL_RS03460 0.20 -1.0 338,679 + SGL_RS03460 0.31 -1.4 338,724 + SGL_RS03460 0.39 -2.0 338,777 - SGL_RS03460 0.49 -0.9 338,906 - SGL_RS03460 0.72 -1.2 338,929 + SGL_RS03460 0.76 -1.1 339,198 + SGL_RS03465 0.12 +0.4 339,273 + SGL_RS03465 0.27 -0.2 339,283 - SGL_RS03465 0.29 -0.5 339,318 + SGL_RS03465 0.37 -0.5 339,410 + SGL_RS03465 0.56 -0.5 339,439 - SGL_RS03465 0.62 -0.5 339,444 + SGL_RS03465 0.63 -1.5 339,444 + SGL_RS03465 0.63 -1.6 339,621 + -0.4 339,674 - -0.2
Or see this region's nucleotide sequence