Experiment: growth in full media bubbled with air enriched in 1% CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02940 and SGL_RS02945 are separated by 81 nucleotides SGL_RS02945 and SGL_RS02950 overlap by 4 nucleotides SGL_RS02950 and SGL_RS02955 are separated by 66 nucleotides SGL_RS02955 and SGL_RS02960 overlap by 1 nucleotides
SGL_RS02940: SGL_RS02940 - magnesium chelatase ATPase subunit D, at 232,008 to 234,038
_RS02940
SGL_RS02945: SGL_RS02945 - hypothetical protein, at 234,120 to 234,308
_RS02945
SGL_RS02950: SGL_RS02950 - hypothetical protein, at 234,305 to 234,838
_RS02950
SGL_RS02955: SGL_RS02955 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 234,905 to 236,356
_RS02955
SGL_RS02960: SGL_RS02960 - alanine dehydrogenase, at 236,356 to 237,438
_RS02960
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -1
0
1 at 234.086 kb on + strand at 234.094 kb on - strand at 235.058 kb on - strand, within SGL_RS02955 at 235.279 kb on + strand, within SGL_RS02955 at 236.104 kb on + strand, within SGL_RS02955 at 236.238 kb on - strand at 236.378 kb on - strand at 236.473 kb on + strand, within SGL_RS02960 at 236.568 kb on - strand, within SGL_RS02960 at 236.692 kb on + strand, within SGL_RS02960 at 236.727 kb on - strand, within SGL_RS02960 at 236.776 kb on + strand, within SGL_RS02960 at 236.799 kb on + strand, within SGL_RS02960 at 236.836 kb on + strand, within SGL_RS02960 at 236.862 kb on + strand, within SGL_RS02960 at 236.862 kb on + strand, within SGL_RS02960 at 236.895 kb on + strand, within SGL_RS02960 at 236.925 kb on - strand, within SGL_RS02960 at 237.008 kb on + strand, within SGL_RS02960 at 237.118 kb on + strand, within SGL_RS02960 at 237.199 kb on + strand, within SGL_RS02960 at 237.236 kb on + strand, within SGL_RS02960 at 237.306 kb on + strand, within SGL_RS02960 at 237.326 kb on - strand, within SGL_RS02960
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 remove 234,086 + +0.1 234,094 - +0.2 235,058 - SGL_RS02955 0.11 -1.0 235,279 + SGL_RS02955 0.26 -1.7 236,104 + SGL_RS02955 0.83 -1.0 236,238 - -1.2 236,378 - +0.2 236,473 + SGL_RS02960 0.11 +0.7 236,568 - SGL_RS02960 0.20 -0.4 236,692 + SGL_RS02960 0.31 -0.7 236,727 - SGL_RS02960 0.34 -0.0 236,776 + SGL_RS02960 0.39 -0.8 236,799 + SGL_RS02960 0.41 +0.0 236,836 + SGL_RS02960 0.44 -0.3 236,862 + SGL_RS02960 0.47 -0.5 236,862 + SGL_RS02960 0.47 -0.3 236,895 + SGL_RS02960 0.50 -0.1 236,925 - SGL_RS02960 0.53 -1.2 237,008 + SGL_RS02960 0.60 +0.4 237,118 + SGL_RS02960 0.70 -0.4 237,199 + SGL_RS02960 0.78 -0.1 237,236 + SGL_RS02960 0.81 -0.0 237,306 + SGL_RS02960 0.88 +0.5 237,326 - SGL_RS02960 0.90 +0.5
Or see this region's nucleotide sequence