Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18115

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18110 and SGL_RS18115 are separated by 88 nucleotidesSGL_RS18115 and SGL_RS18120 are separated by 65 nucleotidesSGL_RS18120 and SGL_RS19505 are separated by 51 nucleotides SGL_RS18110: SGL_RS18110 - peptide chain release factor 1, at 3,520,597 to 3,521,694 _RS18110 SGL_RS18115: SGL_RS18115 - DUF3727 domain-containing protein, at 3,521,783 to 3,522,367 _RS18115 SGL_RS18120: SGL_RS18120 - 5'/3'-nucleotidase SurE, at 3,522,433 to 3,523,260 _RS18120 SGL_RS19505: SGL_RS19505 - hypothetical protein, at 3,523,312 to 3,523,458 _RS19505 Position (kb) 3521 3522 3523Strain fitness (log2 ratio) -3 -2 -1 0 1at 3521.915 kb on + strand, within SGL_RS18115at 3522.247 kb on - strand, within SGL_RS18115at 3522.318 kb on - strandat 3522.323 kb on - strandat 3522.584 kb on - strand, within SGL_RS18120at 3522.598 kb on - strand, within SGL_RS18120at 3522.660 kb on + strand, within SGL_RS18120at 3522.795 kb on - strand, within SGL_RS18120at 3522.845 kb on - strand, within SGL_RS18120at 3522.861 kb on - strand, within SGL_RS18120at 3522.944 kb on - strand, within SGL_RS18120at 3522.956 kb on - strand, within SGL_RS18120at 3522.956 kb on - strand, within SGL_RS18120at 3523.036 kb on + strand, within SGL_RS18120at 3523.036 kb on + strand, within SGL_RS18120at 3523.036 kb on + strand, within SGL_RS18120at 3523.043 kb on + strand, within SGL_RS18120at 3523.051 kb on - strand, within SGL_RS18120at 3523.064 kb on - strand, within SGL_RS18120at 3523.139 kb on + strand, within SGL_RS18120at 3523.147 kb on - strand, within SGL_RS18120at 3523.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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3,521,915 + SGL_RS18115 0.23 -3.7
3,522,247 - SGL_RS18115 0.79 -2.2
3,522,318 - -3.3
3,522,323 - -2.1
3,522,584 - SGL_RS18120 0.18 -0.4
3,522,598 - SGL_RS18120 0.20 +0.3
3,522,660 + SGL_RS18120 0.27 -0.2
3,522,795 - SGL_RS18120 0.44 -0.1
3,522,845 - SGL_RS18120 0.50 -0.1
3,522,861 - SGL_RS18120 0.52 -0.4
3,522,944 - SGL_RS18120 0.62 +0.8
3,522,956 - SGL_RS18120 0.63 -0.5
3,522,956 - SGL_RS18120 0.63 +0.3
3,523,036 + SGL_RS18120 0.73 -0.5
3,523,036 + SGL_RS18120 0.73 +0.5
3,523,036 + SGL_RS18120 0.73 -0.9
3,523,043 + SGL_RS18120 0.74 +0.6
3,523,051 - SGL_RS18120 0.75 +0.5
3,523,064 - SGL_RS18120 0.76 -0.2
3,523,139 + SGL_RS18120 0.85 +0.0
3,523,147 - SGL_RS18120 0.86 +0.2
3,523,186 - +0.0

Or see this region's nucleotide sequence