Experiment: growth in full media bubbled with ambient air
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18050 and SGL_RS18055 are separated by 110 nucleotides SGL_RS18055 and SGL_RS18060 are separated by 198 nucleotides
SGL_RS18050: SGL_RS18050 - tRNA pseudouridine(55) synthase TruB, at 3,508,111 to 3,509,001
_RS18050
SGL_RS18055: SGL_RS18055 - HAD family hydrolase, at 3,509,112 to 3,509,747
_RS18055
SGL_RS18060: SGL_RS18060 - S8 family serine peptidase, at 3,509,946 to 3,511,580
_RS18060
Position (kb)
3509
3510 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3508.138 kb on + strand at 3508.139 kb on - strand at 3508.267 kb on - strand, within SGL_RS18050 at 3508.289 kb on - strand, within SGL_RS18050 at 3508.312 kb on - strand, within SGL_RS18050 at 3508.497 kb on + strand, within SGL_RS18050 at 3508.703 kb on + strand, within SGL_RS18050 at 3508.719 kb on + strand, within SGL_RS18050 at 3508.798 kb on + strand, within SGL_RS18050 at 3508.912 kb on + strand, within SGL_RS18050 at 3508.980 kb on - strand at 3509.192 kb on - strand, within SGL_RS18055 at 3509.197 kb on + strand, within SGL_RS18055 at 3509.224 kb on - strand, within SGL_RS18055 at 3509.240 kb on + strand, within SGL_RS18055 at 3509.414 kb on + strand, within SGL_RS18055 at 3509.750 kb on - strand at 3509.927 kb on + strand at 3510.048 kb on - strand at 3510.053 kb on - strand at 3510.124 kb on + strand, within SGL_RS18060 at 3510.124 kb on + strand, within SGL_RS18060 at 3510.145 kb on + strand, within SGL_RS18060 at 3510.293 kb on + strand, within SGL_RS18060 at 3510.299 kb on + strand, within SGL_RS18060 at 3510.307 kb on - strand, within SGL_RS18060 at 3510.315 kb on + strand, within SGL_RS18060 at 3510.393 kb on + strand, within SGL_RS18060 at 3510.466 kb on + strand, within SGL_RS18060 at 3510.580 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air remove 3,508,138 + +1.7 3,508,139 - +1.7 3,508,267 - SGL_RS18050 0.18 +1.7 3,508,289 - SGL_RS18050 0.20 +1.6 3,508,312 - SGL_RS18050 0.23 +1.8 3,508,497 + SGL_RS18050 0.43 +1.4 3,508,703 + SGL_RS18050 0.66 +1.7 3,508,719 + SGL_RS18050 0.68 +1.9 3,508,798 + SGL_RS18050 0.77 +2.1 3,508,912 + SGL_RS18050 0.90 +2.1 3,508,980 - +1.0 3,509,192 - SGL_RS18055 0.13 -2.6 3,509,197 + SGL_RS18055 0.13 -4.4 3,509,224 - SGL_RS18055 0.18 -3.0 3,509,240 + SGL_RS18055 0.20 -3.0 3,509,414 + SGL_RS18055 0.47 -3.1 3,509,750 - +0.5 3,509,927 + +0.0 3,510,048 - +0.4 3,510,053 - +0.1 3,510,124 + SGL_RS18060 0.11 -0.7 3,510,124 + SGL_RS18060 0.11 -0.2 3,510,145 + SGL_RS18060 0.12 -0.5 3,510,293 + SGL_RS18060 0.21 -0.1 3,510,299 + SGL_RS18060 0.22 +0.4 3,510,307 - SGL_RS18060 0.22 +0.2 3,510,315 + SGL_RS18060 0.23 -0.3 3,510,393 + SGL_RS18060 0.27 -0.0 3,510,466 + SGL_RS18060 0.32 -0.1 3,510,580 + SGL_RS18060 0.39 +0.1 3,510,641 + SGL_RS18060 0.43 +0.1 3,510,641 + SGL_RS18060 0.43 +1.0 3,510,641 + SGL_RS18060 0.43 -0.9 3,510,649 - SGL_RS18060 0.43 -0.1 3,510,649 - SGL_RS18060 0.43 +0.1 3,510,649 - SGL_RS18060 0.43 -0.6 3,510,649 - SGL_RS18060 0.43 +0.4
Or see this region's nucleotide sequence