Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18055

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18050 and SGL_RS18055 are separated by 110 nucleotidesSGL_RS18055 and SGL_RS18060 are separated by 198 nucleotides SGL_RS18050: SGL_RS18050 - tRNA pseudouridine(55) synthase TruB, at 3,508,111 to 3,509,001 _RS18050 SGL_RS18055: SGL_RS18055 - HAD family hydrolase, at 3,509,112 to 3,509,747 _RS18055 SGL_RS18060: SGL_RS18060 - S8 family serine peptidase, at 3,509,946 to 3,511,580 _RS18060 Position (kb) 3509 3510Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3508.138 kb on + strandat 3508.139 kb on - strandat 3508.267 kb on - strand, within SGL_RS18050at 3508.289 kb on - strand, within SGL_RS18050at 3508.312 kb on - strand, within SGL_RS18050at 3508.497 kb on + strand, within SGL_RS18050at 3508.703 kb on + strand, within SGL_RS18050at 3508.719 kb on + strand, within SGL_RS18050at 3508.798 kb on + strand, within SGL_RS18050at 3508.912 kb on + strand, within SGL_RS18050at 3508.980 kb on - strandat 3509.192 kb on - strand, within SGL_RS18055at 3509.197 kb on + strand, within SGL_RS18055at 3509.224 kb on - strand, within SGL_RS18055at 3509.240 kb on + strand, within SGL_RS18055at 3509.414 kb on + strand, within SGL_RS18055at 3509.750 kb on - strandat 3509.927 kb on + strandat 3510.048 kb on - strandat 3510.053 kb on - strandat 3510.124 kb on + strand, within SGL_RS18060at 3510.124 kb on + strand, within SGL_RS18060at 3510.145 kb on + strand, within SGL_RS18060at 3510.293 kb on + strand, within SGL_RS18060at 3510.299 kb on + strand, within SGL_RS18060at 3510.307 kb on - strand, within SGL_RS18060at 3510.315 kb on + strand, within SGL_RS18060at 3510.393 kb on + strand, within SGL_RS18060at 3510.466 kb on + strand, within SGL_RS18060at 3510.580 kb on + strand, within SGL_RS18060at 3510.641 kb on + strand, within SGL_RS18060at 3510.641 kb on + strand, within SGL_RS18060at 3510.641 kb on + strand, within SGL_RS18060at 3510.649 kb on - strand, within SGL_RS18060at 3510.649 kb on - strand, within SGL_RS18060at 3510.649 kb on - strand, within SGL_RS18060at 3510.649 kb on - strand, within SGL_RS18060

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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3,508,138 + +1.7
3,508,139 - +1.7
3,508,267 - SGL_RS18050 0.18 +1.7
3,508,289 - SGL_RS18050 0.20 +1.6
3,508,312 - SGL_RS18050 0.23 +1.8
3,508,497 + SGL_RS18050 0.43 +1.4
3,508,703 + SGL_RS18050 0.66 +1.7
3,508,719 + SGL_RS18050 0.68 +1.9
3,508,798 + SGL_RS18050 0.77 +2.1
3,508,912 + SGL_RS18050 0.90 +2.1
3,508,980 - +1.0
3,509,192 - SGL_RS18055 0.13 -2.6
3,509,197 + SGL_RS18055 0.13 -4.4
3,509,224 - SGL_RS18055 0.18 -3.0
3,509,240 + SGL_RS18055 0.20 -3.0
3,509,414 + SGL_RS18055 0.47 -3.1
3,509,750 - +0.5
3,509,927 + +0.0
3,510,048 - +0.4
3,510,053 - +0.1
3,510,124 + SGL_RS18060 0.11 -0.7
3,510,124 + SGL_RS18060 0.11 -0.2
3,510,145 + SGL_RS18060 0.12 -0.5
3,510,293 + SGL_RS18060 0.21 -0.1
3,510,299 + SGL_RS18060 0.22 +0.4
3,510,307 - SGL_RS18060 0.22 +0.2
3,510,315 + SGL_RS18060 0.23 -0.3
3,510,393 + SGL_RS18060 0.27 -0.0
3,510,466 + SGL_RS18060 0.32 -0.1
3,510,580 + SGL_RS18060 0.39 +0.1
3,510,641 + SGL_RS18060 0.43 +0.1
3,510,641 + SGL_RS18060 0.43 +1.0
3,510,641 + SGL_RS18060 0.43 -0.9
3,510,649 - SGL_RS18060 0.43 -0.1
3,510,649 - SGL_RS18060 0.43 +0.1
3,510,649 - SGL_RS18060 0.43 -0.6
3,510,649 - SGL_RS18060 0.43 +0.4

Or see this region's nucleotide sequence