Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17855

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17845 and SGL_RS17850 are separated by 189 nucleotidesSGL_RS17850 and SGL_RS20200 are separated by 70 nucleotidesSGL_RS20200 and SGL_RS17855 are separated by 33 nucleotidesSGL_RS17855 and SGL_RS17860 are separated by 42 nucleotidesSGL_RS17860 and SGL_RS17865 are separated by 325 nucleotides SGL_RS17845: SGL_RS17845 - hypothetical protein, at 3,461,313 to 3,461,654 _RS17845 SGL_RS17850: SGL_RS17850 - DUF3172 domain-containing protein, at 3,461,844 to 3,462,422 _RS17850 SGL_RS20200: SGL_RS20200 - DUF190 domain-containing protein, at 3,462,493 to 3,462,609 _RS20200 SGL_RS17855: SGL_RS17855 - hypothetical protein, at 3,462,643 to 3,462,840 _RS17855 SGL_RS17860: SGL_RS17860 - Holliday junction resolvase RuvX, at 3,462,883 to 3,463,341 _RS17860 SGL_RS17865: SGL_RS17865 - Ppx/GppA phosphatase family protein, at 3,463,667 to 3,465,289 _RS17865 Position (kb) 3462 3463Strain fitness (log2 ratio) -3 -2 -1 0 1at 3462.446 kb on + strandat 3462.464 kb on + strandat 3462.681 kb on + strand, within SGL_RS17855at 3462.684 kb on - strand, within SGL_RS17855at 3462.740 kb on + strand, within SGL_RS17855at 3462.753 kb on - strand, within SGL_RS17855at 3463.145 kb on + strand, within SGL_RS17860at 3463.153 kb on - strand, within SGL_RS17860at 3463.153 kb on - strand, within SGL_RS17860

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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3,462,446 + +0.6
3,462,464 + +0.0
3,462,681 + SGL_RS17855 0.19 -0.3
3,462,684 - SGL_RS17855 0.21 +0.2
3,462,740 + SGL_RS17855 0.49 -0.2
3,462,753 - SGL_RS17855 0.56 -0.2
3,463,145 + SGL_RS17860 0.57 -1.5
3,463,153 - SGL_RS17860 0.59 -2.8
3,463,153 - SGL_RS17860 0.59 -3.7

Or see this region's nucleotide sequence