Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17700

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17690 and SGL_RS17695 are separated by 18 nucleotidesSGL_RS17695 and SGL_RS17700 are separated by 13 nucleotidesSGL_RS17700 and SGL_RS17705 are separated by 255 nucleotidesSGL_RS17705 and SGL_RS17710 overlap by 8 nucleotides SGL_RS17690: SGL_RS17690 - hypothetical protein, at 3,424,394 to 3,424,648 _RS17690 SGL_RS17695: SGL_RS17695 - DNA adenine methylase, at 3,424,667 to 3,425,524 _RS17695 SGL_RS17700: SGL_RS17700 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 3,425,538 to 3,426,518 _RS17700 SGL_RS17705: SGL_RS17705 - type II toxin-antitoxin system HicA family toxin, at 3,426,774 to 3,427,001 _RS17705 SGL_RS17710: SGL_RS17710 - type II toxin-antitoxin system HicB family antitoxin, at 3,426,994 to 3,427,203 _RS17710 Position (kb) 3425 3426 3427Strain fitness (log2 ratio) -2 -1 0 1at 3424.625 kb on + strandat 3424.858 kb on + strand, within SGL_RS17695at 3426.631 kb on - strandat 3426.695 kb on - strandat 3426.746 kb on - strandat 3427.006 kb on - strandat 3427.278 kb on + strandat 3427.278 kb on + strandat 3427.302 kb on + strandat 3427.310 kb on - strandat 3427.343 kb on + strandat 3427.367 kb on + strandat 3427.430 kb on - strandat 3427.444 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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3,424,625 + +0.2
3,424,858 + SGL_RS17695 0.22 -2.6
3,426,631 - -0.4
3,426,695 - +0.6
3,426,746 - +0.1
3,427,006 - -0.7
3,427,278 + -0.9
3,427,278 + -0.3
3,427,302 + -0.1
3,427,310 - +0.2
3,427,343 + +0.1
3,427,367 + -0.4
3,427,430 - -0.1
3,427,444 + +0.2

Or see this region's nucleotide sequence