Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17360

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17350 and SGL_RS17355 overlap by 11 nucleotidesSGL_RS17355 and SGL_RS17360 are separated by 136 nucleotidesSGL_RS17360 and SGL_RS17365 are separated by 229 nucleotides SGL_RS17350: SGL_RS17350 - hypothetical protein, at 3,347,941 to 3,348,201 _RS17350 SGL_RS17355: SGL_RS17355 - type II toxin-antitoxin system RelE/ParE family toxin, at 3,348,191 to 3,348,553 _RS17355 SGL_RS17360: SGL_RS17360 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 3,348,690 to 3,351,296 _RS17360 SGL_RS17365: SGL_RS17365 - hypothetical protein, at 3,351,526 to 3,352,353 _RS17365 Position (kb) 3348 3349 3350 3351 3352Strain fitness (log2 ratio) -1 0 1at 3347.767 kb on + strandat 3347.799 kb on - strandat 3347.811 kb on + strandat 3347.829 kb on - strandat 3348.190 kb on + strandat 3348.238 kb on - strand, within SGL_RS17355at 3349.159 kb on - strand, within SGL_RS17360at 3350.245 kb on - strand, within SGL_RS17360at 3351.358 kb on + strandat 3351.451 kb on + strandat 3351.451 kb on - strandat 3351.485 kb on + strandat 3351.910 kb on - strand, within SGL_RS17365at 3352.074 kb on + strand, within SGL_RS17365at 3352.241 kb on - strand, within SGL_RS17365

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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3,347,767 + +0.5
3,347,799 - -0.4
3,347,811 + -0.0
3,347,829 - -0.1
3,348,190 + -0.3
3,348,238 - SGL_RS17355 0.13 +0.7
3,349,159 - SGL_RS17360 0.18 -1.7
3,350,245 - SGL_RS17360 0.60 +1.2
3,351,358 + -0.1
3,351,451 + -0.2
3,351,451 - +0.6
3,351,485 + -0.9
3,351,910 - SGL_RS17365 0.46 -0.3
3,352,074 + SGL_RS17365 0.66 +0.0
3,352,241 - SGL_RS17365 0.86 -0.6

Or see this region's nucleotide sequence