Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15640

Experiment: growth in full media bubbled with ambient air

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS15625 and SGL_RS15630 overlap by 29 nucleotidesSGL_RS15630 and SGL_RS15635 are separated by 114 nucleotidesSGL_RS15635 and SGL_RS15640 are separated by 134 nucleotidesSGL_RS15640 and SGL_RS15645 are separated by 42 nucleotides SGL_RS15625: SGL_RS15625 - amidohydrolase family protein, at 2,956,107 to 2,957,153 _RS15625 SGL_RS15630: SGL_RS15630 - 2Fe-2S iron-sulfur cluster-binding protein, at 2,957,125 to 2,957,364 _RS15630 SGL_RS15635: SGL_RS15635 - hypothetical protein, at 2,957,479 to 2,957,901 _RS15635 SGL_RS15640: SGL_RS15640 - pyruvate kinase, at 2,958,036 to 2,959,487 _RS15640 SGL_RS15645: SGL_RS15645 - NAD(P)/FAD-dependent oxidoreductase, at 2,959,530 to 2,960,756 _RS15645 Position (kb) 2958 2959 2960Strain fitness (log2 ratio) -1 0 1at 2957.119 kb on + strandat 2957.169 kb on + strand, within SGL_RS15630at 2957.177 kb on - strand, within SGL_RS15630at 2957.178 kb on - strand, within SGL_RS15630at 2957.196 kb on - strand, within SGL_RS15630at 2957.199 kb on + strand, within SGL_RS15630at 2957.242 kb on - strand, within SGL_RS15630at 2957.242 kb on - strand, within SGL_RS15630at 2957.443 kb on + strandat 2957.453 kb on + strandat 2957.524 kb on + strand, within SGL_RS15635at 2957.526 kb on + strand, within SGL_RS15635at 2957.599 kb on + strand, within SGL_RS15635at 2957.599 kb on + strand, within SGL_RS15635at 2957.742 kb on - strand, within SGL_RS15635at 2957.793 kb on - strand, within SGL_RS15635at 2957.979 kb on - strandat 2958.000 kb on - strandat 2958.159 kb on - strandat 2958.429 kb on + strand, within SGL_RS15640at 2958.437 kb on - strand, within SGL_RS15640at 2958.535 kb on - strand, within SGL_RS15640at 2958.627 kb on - strand, within SGL_RS15640at 2958.636 kb on + strand, within SGL_RS15640at 2958.652 kb on - strand, within SGL_RS15640at 2958.728 kb on - strand, within SGL_RS15640at 2958.733 kb on - strand, within SGL_RS15640at 2958.824 kb on - strand, within SGL_RS15640at 2958.844 kb on - strand, within SGL_RS15640at 2958.844 kb on - strand, within SGL_RS15640at 2958.850 kb on - strand, within SGL_RS15640at 2958.852 kb on + strand, within SGL_RS15640at 2958.953 kb on - strand, within SGL_RS15640at 2958.964 kb on - strand, within SGL_RS15640at 2958.996 kb on - strand, within SGL_RS15640at 2959.101 kb on - strand, within SGL_RS15640at 2959.130 kb on - strand, within SGL_RS15640at 2959.267 kb on - strand, within SGL_RS15640at 2959.361 kb on - strandat 2959.361 kb on - strandat 2959.564 kb on + strandat 2959.564 kb on + strandat 2959.643 kb on - strandat 2959.730 kb on + strand, within SGL_RS15645at 2959.735 kb on - strand, within SGL_RS15645at 2959.782 kb on + strand, within SGL_RS15645at 2959.782 kb on + strand, within SGL_RS15645at 2959.790 kb on - strand, within SGL_RS15645at 2959.828 kb on - strand, within SGL_RS15645at 2959.884 kb on - strand, within SGL_RS15645at 2959.916 kb on - strand, within SGL_RS15645at 2959.926 kb on + strand, within SGL_RS15645at 2959.941 kb on - strand, within SGL_RS15645at 2959.962 kb on - strand, within SGL_RS15645at 2959.985 kb on + strand, within SGL_RS15645at 2959.987 kb on - strand, within SGL_RS15645at 2960.001 kb on + strand, within SGL_RS15645at 2960.009 kb on + strand, within SGL_RS15645at 2960.057 kb on - strand, within SGL_RS15645at 2960.138 kb on + strand, within SGL_RS15645at 2960.186 kb on - strand, within SGL_RS15645at 2960.220 kb on + strand, within SGL_RS15645at 2960.238 kb on + strand, within SGL_RS15645at 2960.351 kb on - strand, within SGL_RS15645at 2960.370 kb on + strand, within SGL_RS15645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
remove
2,957,119 + +0.2
2,957,169 + SGL_RS15630 0.18 -0.3
2,957,177 - SGL_RS15630 0.22 +0.9
2,957,178 - SGL_RS15630 0.22 +0.2
2,957,196 - SGL_RS15630 0.30 -0.4
2,957,199 + SGL_RS15630 0.31 +1.4
2,957,242 - SGL_RS15630 0.49 +0.8
2,957,242 - SGL_RS15630 0.49 +0.6
2,957,443 + +0.1
2,957,453 + -0.0
2,957,524 + SGL_RS15635 0.11 -0.0
2,957,526 + SGL_RS15635 0.11 -0.4
2,957,599 + SGL_RS15635 0.28 -0.4
2,957,599 + SGL_RS15635 0.28 -0.1
2,957,742 - SGL_RS15635 0.62 -0.6
2,957,793 - SGL_RS15635 0.74 +0.2
2,957,979 - -0.2
2,958,000 - +0.9
2,958,159 - +0.4
2,958,429 + SGL_RS15640 0.27 +0.4
2,958,437 - SGL_RS15640 0.28 -0.3
2,958,535 - SGL_RS15640 0.34 +0.3
2,958,627 - SGL_RS15640 0.41 -0.1
2,958,636 + SGL_RS15640 0.41 -0.5
2,958,652 - SGL_RS15640 0.42 -0.1
2,958,728 - SGL_RS15640 0.48 -0.1
2,958,733 - SGL_RS15640 0.48 +1.6
2,958,824 - SGL_RS15640 0.54 -0.5
2,958,844 - SGL_RS15640 0.56 +1.0
2,958,844 - SGL_RS15640 0.56 -0.1
2,958,850 - SGL_RS15640 0.56 +0.1
2,958,852 + SGL_RS15640 0.56 -0.3
2,958,953 - SGL_RS15640 0.63 -0.2
2,958,964 - SGL_RS15640 0.64 +0.3
2,958,996 - SGL_RS15640 0.66 -0.1
2,959,101 - SGL_RS15640 0.73 -0.3
2,959,130 - SGL_RS15640 0.75 -0.7
2,959,267 - SGL_RS15640 0.85 -0.1
2,959,361 - -0.3
2,959,361 - -0.6
2,959,564 + +0.9
2,959,564 + +0.5
2,959,643 - +0.6
2,959,730 + SGL_RS15645 0.16 +1.0
2,959,735 - SGL_RS15645 0.17 +0.2
2,959,782 + SGL_RS15645 0.21 +0.3
2,959,782 + SGL_RS15645 0.21 -0.4
2,959,790 - SGL_RS15645 0.21 -0.0
2,959,828 - SGL_RS15645 0.24 +0.6
2,959,884 - SGL_RS15645 0.29 +0.8
2,959,916 - SGL_RS15645 0.31 +0.7
2,959,926 + SGL_RS15645 0.32 +0.6
2,959,941 - SGL_RS15645 0.33 +0.4
2,959,962 - SGL_RS15645 0.35 +0.3
2,959,985 + SGL_RS15645 0.37 +1.1
2,959,987 - SGL_RS15645 0.37 +0.3
2,960,001 + SGL_RS15645 0.38 -0.1
2,960,009 + SGL_RS15645 0.39 -1.1
2,960,057 - SGL_RS15645 0.43 +0.6
2,960,138 + SGL_RS15645 0.50 +0.7
2,960,186 - SGL_RS15645 0.53 +0.0
2,960,220 + SGL_RS15645 0.56 +0.6
2,960,238 + SGL_RS15645 0.58 +0.7
2,960,351 - SGL_RS15645 0.67 +0.7
2,960,370 + SGL_RS15645 0.68 +1.0

Or see this region's nucleotide sequence