Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15205

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15195 and SGL_RS15200 are separated by 210 nucleotidesSGL_RS15200 and SGL_RS15205 are separated by 28 nucleotidesSGL_RS15205 and SGL_RS15210 are separated by 166 nucleotidesSGL_RS15210 and SGL_RS15215 are separated by 163 nucleotides SGL_RS15195: SGL_RS15195 - hypothetical protein, at 2,860,071 to 2,860,289 _RS15195 SGL_RS15200: SGL_RS15200 - hypothetical protein, at 2,860,500 to 2,861,072 _RS15200 SGL_RS15205: SGL_RS15205 - succinate dehydrogenase iron-sulfur subunit, at 2,861,101 to 2,861,838 _RS15205 SGL_RS15210: SGL_RS15210 - AbrB family transcriptional regulator, at 2,862,005 to 2,862,394 _RS15210 SGL_RS15215: SGL_RS15215 - RrF2 family transcriptional regulator, at 2,862,558 to 2,863,031 _RS15215 Position (kb) 2861 2862Strain fitness (log2 ratio) -1 0 1at 2860.213 kb on - strand, within SGL_RS15195at 2860.274 kb on - strandat 2860.328 kb on - strandat 2860.652 kb on - strand, within SGL_RS15200at 2860.673 kb on - strand, within SGL_RS15200at 2860.966 kb on + strand, within SGL_RS15200at 2861.148 kb on - strandat 2861.152 kb on + strandat 2861.240 kb on + strand, within SGL_RS15205at 2861.409 kb on + strand, within SGL_RS15205at 2861.409 kb on + strand, within SGL_RS15205at 2861.409 kb on + strand, within SGL_RS15205at 2861.554 kb on - strand, within SGL_RS15205at 2861.616 kb on + strand, within SGL_RS15205at 2861.626 kb on + strand, within SGL_RS15205at 2861.626 kb on + strand, within SGL_RS15205at 2861.730 kb on + strand, within SGL_RS15205at 2862.572 kb on + strandat 2862.706 kb on - strand, within SGL_RS15215

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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2,860,213 - SGL_RS15195 0.65 +0.1
2,860,274 - +0.2
2,860,328 - -1.3
2,860,652 - SGL_RS15200 0.27 -0.9
2,860,673 - SGL_RS15200 0.30 -0.3
2,860,966 + SGL_RS15200 0.81 +0.9
2,861,148 - +0.6
2,861,152 + -0.4
2,861,240 + SGL_RS15205 0.19 +0.1
2,861,409 + SGL_RS15205 0.42 +0.2
2,861,409 + SGL_RS15205 0.42 -0.2
2,861,409 + SGL_RS15205 0.42 -0.5
2,861,554 - SGL_RS15205 0.61 +0.2
2,861,616 + SGL_RS15205 0.70 +0.4
2,861,626 + SGL_RS15205 0.71 -0.5
2,861,626 + SGL_RS15205 0.71 +0.6
2,861,730 + SGL_RS15205 0.85 -0.5
2,862,572 + -0.2
2,862,706 - SGL_RS15215 0.31 -0.5

Or see this region's nucleotide sequence